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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim12g044410.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 838aa MW: 92335.8 Da PI: 6.5931 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.8 | 4.4e-19 | 16 | 74 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++++++ps +r++L +++ +++ rq+kvWFqNrR +ek+ Sopim12g044410.0.1 16 KYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECpilsHIEPRQIKVWFQNRRCREKQ 74 5679*****************************************************97 PP | |||||||
2 | START | 175.3 | 3.7e-55 | 160 | 367 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..ga 90 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v +++ v+e+l+d++ W ++++++e+l+ + ++ g+ Sopim12g044410.0.1 160 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGMAARACGLVGLDPT-RVAEILKDRPSWYRDCRAVEVLNMLPTAngGT 249 789*******************************************************.8888888888****************9999** PP EEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS START 91 lqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177 ++l +++l+a+++l+p Rdf+ +Ry+ +g++v++++S+ ++q+ p+ +++vRae+lpSg+li+p+++g+s v++v+h++l+++++ Sopim12g044410.0.1 250 IELLYMQLYAPTTLAPpRDFWLIRYTTVTDDGSFVVCERSLGNTQNGPSmpqVQNFVRAEMLPSGYLIRPCEGGGSIVHIVDHMNLEAWSV 340 ************************************************9998899************************************ PP HHHHHHHHHHHHHHHHHHHHHHTXXXX CS START 178 hwllrslvksglaegaktwvatlqrqc 204 +++lr+l++s+++ ++kt++a+l++++ Sopim12g044410.0.1 341 PEVLRPLYESSAVLAQKTTMAALRQLR 367 ***********************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.742 | 11 | 75 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.51E-17 | 13 | 77 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.3E-16 | 13 | 79 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.52E-17 | 16 | 76 | No hit | No description |
Pfam | PF00046 | 1.1E-16 | 17 | 74 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-18 | 18 | 74 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 1.10E-5 | 68 | 107 | No hit | No description |
PROSITE profile | PS50848 | 26.76 | 150 | 365 | IPR002913 | START domain |
CDD | cd08875 | 2.25E-75 | 154 | 369 | No hit | No description |
SMART | SM00234 | 1.6E-40 | 159 | 369 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.9E-24 | 159 | 365 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 2.75E-36 | 159 | 367 | No hit | No description |
Pfam | PF01852 | 1.6E-52 | 160 | 367 | IPR002913 | START domain |
Pfam | PF08670 | 2.8E-50 | 694 | 836 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 838 aa Download sequence Send to blast |
MSMSCKDGKS IEDNGKYVRY TPEQVEALER LYHECPKPSS MRRQQLIREC PILSHIEPRQ 60 IKVWFQNRRC REKQRKESSR LQGVNRKLSA MNKLLMEEND RLQKQVSQLV YENGYFRKQT 120 QTTKLASKDT SCESVVTSGQ HHLTPQHPPR DASPAGLLSI AEETLTEFLS KATGTAVEWV 180 QMPGMKPGPD SIGIIAISHG CTGMAARACG LVGLDPTRVA EILKDRPSWY RDCRAVEVLN 240 MLPTANGGTI ELLYMQLYAP TTLAPPRDFW LIRYTTVTDD GSFVVCERSL GNTQNGPSMP 300 QVQNFVRAEM LPSGYLIRPC EGGGSIVHIV DHMNLEAWSV PEVLRPLYES SAVLAQKTTM 360 AALRQLRQLT LEVSQPNVTN WGRRPAALRA LSKRLNRGFN EALNGFSSEG WSMLDNDGMD 420 DVTILVNSSP DKLMGLNLSF SDGFTSLSNA VLCAKASMLL QSVTPATLLR FLREHRSEWV 480 DNNIDAYSAA AVKVGPCSLP GVRVSNFGGQ VILPLAHTVE HEELLEVIKL EGVCHSPEDV 540 IMPRDMFLLQ LCSGMDENAV GTCAELVFAP IDASFADDTP LLPSGFRIIP LDSAKEASSP 600 NRTLDLTSAL ETGPVGSKVA NDLKSTGGTS KSIMTIAFQF AFESHMQENV ASMARKYVRS 660 FISSVQRVAL ALSPSNFGSL GGLRLPLGTP EAHTLARWIC QSYRRFLGVE LPKLSSEGSE 720 SLLDSLWHHS DAIICCSAKA LPVFTFANQG GLDMLETTLV ALQDISLEKI FDEHGRKNLC 780 SEFPQIMQQG FACLQGGICL SSMGRPVSYE KAVAWKVLNE EDTAHCIGFM FVNWSFV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004252354.1 | 0.0 | homeobox-leucine zipper protein ATHB-15 | ||||
Swissprot | Q9ZU11 | 0.0 | ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15 | ||||
TrEMBL | A0A3Q7JAS2 | 0.0 | A0A3Q7JAS2_SOLLC; Uncharacterized protein | ||||
STRING | Solyc12g044410.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA457 | 24 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52150.1 | 0.0 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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