PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim12g042010.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bHLH

Protein Properties

Length: 128aa MW: 14792.3 Da PI: 11.8662

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim12g042010.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.7	0.00012	72	111	10	54
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++RR+r + f eLr+++P + ++ L ++ +YI+sL Sopim12g042010.0.1 72 KKRRRRSSDEFGELRKIVPGG-----QLMDFYNLLDETADYINSL 111 9******************74.....3466666666666666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.442	62	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.23E-8	63	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-6	72	121	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 128 aa Download sequence Send to blast
MTTTRSCIIR SRFAYRFLHS LRKMNQQDKT NSRRVKHAAY ASMASVVGSK RAWSRAVLSK 60 IRNRSLLLKK KKKRRRRSSD EFGELRKIVP GGQLMDFYNL LDETADYINS LTSQVHVMKN 120 ILNLLST*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	68	76	KKKKKRRRR
2	69	74	KKKKRR
3	70	75	KKKRRR
4	70	76	KKKRRRR
5	71	76	KKRRRR

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975524	0.0	HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015086956.2	5e-54	transcription factor IBH1-like
TrEMBL	A0A3Q7JVU1	1e-87	A0A3Q7JVU1_SOLLC; Uncharacterized protein
STRING	Solyc12g042010.1.1	2e-88	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11759	4	4