PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim12g036470.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 273aa    MW: 31341.3 Da    PI: 8.3045
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim12g036470.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.54.7e-08151198455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR +iN+++  L++++P +     k +  a +L + ++Y++sLq
  Sopim12g036470.0.1 151 SHSLAERVRRGKINERLRCLQDIVPGC----YKSMGMAVMLDEIINYVQSLQ 198
                         8*************************8....3569999***********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.70E-9145202No hitNo description
SuperFamilySSF474592.88E-16145215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-15147209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.237147197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-5151198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-8153203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MAHHYFNPDM QIIIPPSSVF NTDTNLNFHN QFPEQNYLNT ISLEMSNFNF HKHSDEHILN  60
QTSDFPVYLT ENFQQDMFNL PVPTRNDINE SKKRKTIETP ESSSAYSSPA VSSRRKTGKG  120
RGKRVKRDEN EEEKLRQVVH VRAKRGQATD SHSLAERVRR GKINERLRCL QDIVPGCYKS  180
MGMAVMLDEI INYVQSLQNQ VEFLSMKLSA ASTYYDFNSE TDILETMQRA KAYEANMMQK  240
LKKEGCEGMG SNQVGPLIDR TFGCYPKLSY NT*
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}.
UniProtINDUCTION: Induced by brassinosteroid, auxin, ethylene and cytokinin, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755240.0HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004252234.10.0transcription factor BEE 1-like
SwissprotQ8GWK76e-59BEE3_ARATH; Transcription factor BEE 3
SwissprotQ8GZ135e-59BEE1_ARATH; Transcription factor BEE 1
TrEMBLA0A3Q7J7Y00.0A0A3Q7J7Y0_SOLLC; Uncharacterized protein
STRINGSolyc12g036470.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39712344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18400.13e-61BR enhanced expression 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP
    Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation.
    New Phytol., 2016. 211(3): p. 912-25
    [PMID:27125220]