PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim12g019810.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 75aa    MW: 8854.04 Da    PI: 5.6157
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim12g019810.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.83.8e-16753148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        + rW + Edell+++++++G ++W+ I + ++  Rt+k+c+++w ++l
  Sopim12g019810.0.1  7 KRRWNPGEDELLKKLIEEHGAKNWSFICQLIP-SRTEKSCREFWCDHL 53
                        579*****************************.***********9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.909257IPR017930Myb domain
SuperFamilySSF466891.36E-17368IPR009057Homeodomain-like
SMARTSM007176.1E-14655IPR001005SANT/Myb domain
PfamPF002492.8E-15753IPR001005SANT/Myb domain
CDDcd001671.44E-12953No hitNo description
Gene3DG3DSA:1.10.10.604.5E-23971IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 75 aa     Download sequence    Send to blast
MKMGQIKRRW NPGEDELLKK LIEEHGAKNW SFICQLIPSR TEKSCREFWC DHLNPQLDHQ  60
PFNPEEEDII FQGS*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755241e-122HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015060233.14e-33transcription factor MYB44-like
TrEMBLA0A3Q7J7864e-48A0A3Q7J786_SOLLC; Uncharacterized protein
STRINGSolyc12g019810.1.16e-49(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1853624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.12e-21myb domain protein 73