PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim12g016150.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 155aa    MW: 17631.1 Da    PI: 5.3822
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim12g016150.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.12.3e-131748940
                        HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
              SRF-TF  9 rqvtfskRrngilKKAeELSvLCdaevaviif 40
                        r+  + kR + ++KKAeELS+ Cd+evaviif
  Sopim12g016150.0.1 17 RNSILDKRVTSLFKKAEELSIVCDVEVAVIIF 48
                        555678*************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006612.839148IPR002100Transcription factor, MADS-box
SMARTSM004323.0E-4160IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.19E-171294IPR002100Transcription factor, MADS-box
PfamPF003195.9E-131351IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MATKRLRDTA NYNENVRNSI LDKRVTSLFK KAEELSIVCD VEVAVIIFRP GKIQPITWKS  60
PSLAQDVLTR YLSFIEFKRL SKLVTHEDYL QKKVDKKEEQ ISKLEKMNEM EESINDPWFI  120
QTIATLGDVS GVESAQKEGK GVNVEDDGHS KDLD*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755240.0HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004252136.14e-86MADS-box protein AGL24-like
TrEMBLK4DD491e-109K4DD49_SOLLC; Uncharacterized protein
STRINGSolyc12g016150.1.11e-109(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.11e-15AGAMOUS-like 96