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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Sopim12g013620.0.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
| Family |
NAC |
| Protein Properties |
Length: 350aa MW: 39475.2 Da PI: 8.6869 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sopim12g013620.0.1 | genome | CSHL | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 168.6 | 2e-52 | 14 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91
lppGfrF Ptdeel+v+yL+kkv+g++++l ++i e+d+yk++Pw Lp+k++ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk
Sopim12g013620.0.1 14 LPPGFRFYPTDEELLVQYLCKKVAGHDFPL-QIIGEIDLYKFDPWVLPSKATFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKV 103
79****************************.89***************988899************************************* PP
NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
++s +g++vg+kk Lvfy g+apkg+kt+W+mheyrl
Sopim12g013620.0.1 104 ITS-QGRKVGIKKALVFYVGKAPKGSKTNWIMHEYRL 139
**9.9999***************************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 350 aa
Download sequence Send
to blast |
MGVQEKDPLL QLSLPPGFRF YPTDEELLVQ YLCKKVAGHD FPLQIIGEID LYKFDPWVLP 60
SKATFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKVITSQGRK VGIKKALVFY 120
VGKAPKGSKT NWIMHEYRLF ESSRKNNGSS KLDEWVLCRI YKKNSSGPKP LMSGLHSSNE 180
YSHGSSTSSS SQFDDMLESL PEMDDRFSNL PRLNSLKAEK FNLDRLDSAN FDWAILAGLK 240
PMPELGPANQ APGVQGQAQG HVNNHIHSDN NNMNFLNDVY AHPPNFRGNT KVESINLDEE 300
VESGKRNQRI DQSSYFQQSL NGFSQAYTNN VDQFGIQCPN QTLNLGFKQ*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-105 | 1 | 169 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-105 | 1 | 169 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-105 | 1 | 169 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-105 | 1 | 169 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 1e-105 | 1 | 169 | 4 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 1e-105 | 1 | 169 | 4 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor involved in abscisic acid-mediated stomatal closure (PubMed:25005917). Regulates the expression of NCED1, a gene involved in the biosynthesis of abscisic acid (ABA) (PubMed:25005917). Required for the stomatal closure induced by the bacterial pathogen Pseudomonas syringae pv tomato DC3000, but not for stomatal reopening (PubMed:25005917). {ECO:0000269|PubMed:25005917}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by abscisic acid (ABA), dehydration and wounding. {ECO:0000269|PubMed:25005917}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF011555 | 0.0 | AF011555.1 Lycopersicon esculentum jasmonic acid 2 (LEJA2) mRNA, complete cds. |
