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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sopim12g011200.0.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
WRKY |
Protein Properties |
Length: 336aa MW: 37828.6 Da PI: 6.2379 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopim12g011200.0.1 | genome | CSHL | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 102 | 3.4e-32 | 190 | 247 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
+Dgy+WrKYGqK vk+s+fpr+YY+Ct+++C+vkk+vers ed ++v++tYeg+Hnh+
Sopim12g011200.0.1 190 EDGYRWRKYGQKAVKNSPFPRNYYKCTTQKCNVKKRVERSYEDSSIVITTYEGQHNHH 247
8********************************************************7 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 336 aa
Download sequence Send
to blast |
MSDNPFYHDY MGIGGGINNT FPFLVENPSN YNNQPITPNI QNQQFVPSSY MTLTECLHGS 60 MDYNTLSNAF GMSCSSSSEV VCPHIDNQDS TEKYNVSTTV EEPVLDSPLG DNQTSVEVPP 120 TPNSSISSTS NEVGEQEDSS KIKKHVQVKG SQEEGEDKSK KECIAKKKGE KKIKEPRFAF 180 MTKSEIDNLE DGYRWRKYGQ KAVKNSPFPR NYYKCTTQKC NVKKRVERSY EDSSIVITTY 240 EGQHNHHCPA TLRGNASFLS SSHFMPNFPP QLFSQMLNIP PNNQNLLITS STYNYNNNNN 300 NYYYQQQQHQ GSEYTLFGGG TNNGDASWVQ KQEPS*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG975524 | 0.0 | HG975524.1 Solanum lycopersicum chromosome ch12, complete genome. |