PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim12g009390.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C3H | ||||||||
Protein Properties | Length: 430aa MW: 45770.1 Da PI: 8.2687 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.7 | 1.5e-11 | 4 | 26 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 + e+Cr+f+r G C+yG+rCkF H Sopim12g009390.0.1 4 RKEPCRNFMR-GSCQYGERCKFLH 26 789*******.************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 16.737 | 2 | 29 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.7E-6 | 3 | 28 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.1E-9 | 4 | 26 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.42E-6 | 4 | 29 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.5E-8 | 6 | 29 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005635 | Cellular Component | nuclear envelope | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 430 aa Download sequence Send to blast |
MPPRKEPCRN FMRGSCQYGE RCKFLHAAQQ QPKPNPFGFG SQSTNFQSTN MQQTKSNPFG 60 FGVQSNSQPR GSSDLGLKQN QYKPFENKWT RSATTNSSSS RQTDNQPVAP NHTCTDAESC 120 RRQIVEDFNN EKPLWLLTCY GHRKNGPCDI TGDVSYEELR AVAYDDAKRG QSLMSIVERE 180 RSQVNSKVAE FENLLQNPYA SSSTSALNAQ SPFPGATPSA SLSAQSPFPG ATPSASSPFP 240 GAAPNASLSA QSPFPGAAPN ALSSAQSSFP PSASSFSQLG TILNTGTSTP PTSTFGQPSL 300 PGNSFKTSNS SGVNAFSFGN TSTSGSFGFG TQVPTQSYQN PSTPSSIFAS SGRNLFSTST 360 TSPHFANPSG GQLPTTSQGL FPVATSPVSI NLTNIASTED FSGDNSIWTK KEWKIGEIPE 420 EAPPDRYVF* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004251711.1 | 0.0 | zinc finger CCCH domain-containing protein 16 | ||||
TrEMBL | A0A3Q7J3J8 | 0.0 | A0A3Q7J3J8_SOLLC; Uncharacterized protein | ||||
STRING | Solyc12g009390.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9439 | 20 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75340.1 | 5e-65 | C3H family protein |