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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sopim12g006170.0.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
WRKY |
Protein Properties |
Length: 416aa MW: 46185.6 Da PI: 7.7401 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopim12g006170.0.1 | genome | CSHL | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 99 | 2.9e-31 | 56 | 112 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
+DgynWrKYGqK vkg+ef+rsYY+Ct+++C +kk+vers+ d+++++i+Y g+H+h+
Sopim12g006170.0.1 56 EDGYNWRKYGQKLVKGNEFTRSYYKCTFPNCLAKKQVERSH-DGHITDIHYIGKHEHP 112
7****************************************.***************8 PP
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2 | WRKY | 100.4 | 1.1e-31 | 234 | 291 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
+Dg +WrKYGqK vkg+++prsYYrC+ agCpvkk+ver+++dpk+v++tYeg+H h+
Sopim12g006170.0.1 234 NDGQRWRKYGQKIVKGNPNPRSYYRCSVAGCPVKKHVERASHDPKLVITTYEGQHVHD 291
8*******************************************************96 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 416 aa
Download sequence Send
to blast |
MEVFVSQSDL QRVSYTIKRE KALDKLQPRR NPDTSAHGLT SDQGTTLLKA PEKPSEDGYN 60 WRKYGQKLVK GNEFTRSYYK CTFPNCLAKK QVERSHDGHI TDIHYIGKHE HPETLSVPQM 120 SPEYVLPLQM KRPDIPIITA LEAEGEKSST PRETCEPSKP PEAPLALAIV SACDSVKVTP 180 LKRYKLENEV DKGDSADSKK QKKDTVATDD TPPVKSHSEP RHIVQTVSEV DIINDGQRWR 240 KYGQKIVKGN PNPRSYYRCS VAGCPVKKHV ERASHDPKLV ITTYEGQHVH DFPTSRPISQ 300 ISVAPDAGTA GIREDSRTES GEKKHVVESK TESGEMKHIR ESKTEAGETK HVKESKAESG 360 ENKHVGESKT ESDGNKHVEE SKPELVGNKH VGESISESGE NKHVGLDMAV HIGAN*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AF313452 | 0.0 | AF313452.1 Solanum dulcamara thermal hysteresis protein STHP-64 gene, complete cds. |