![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopim12g005420.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | DBB | ||||||||
Protein Properties | Length: 283aa MW: 30662.6 Da PI: 6.2274 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 16 | 2.5e-05 | 4 | 46 | 5 | 41 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+ +e e++ C ++ lC C ++ H H++v Sopim12g005420.0.1 4 QCNACEVAEAKVLCCADEAALCWYCDDKVHAAnklankHQRVA 46 7******99*********************6678888888775 PP | |||||||
2 | zf-B_box | 26.8 | 1.1e-08 | 53 | 86 | 2 | 35 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHk 35 ++kC+ ++e +fC +++ llC++C ++H Sopim12g005420.0.1 53 PMPKCDICQETVGFFFCLEDRALLCRKCDISIHT 86 689*******9999*******************3 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.755 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.64E-4 | 3 | 47 | No hit | No description |
SMART | SM00336 | 1.5E-6 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.987 | 52 | 99 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 7.3E-15 | 52 | 99 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.1E-6 | 53 | 95 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.50E-8 | 55 | 99 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 283 aa Download sequence Send to blast |
MKIQCNACEV AEAKVLCCAD EAALCWYCDD KVHAANKLAN KHQRVALSAS SSPMPKCDIC 60 QETVGFFFCL EDRALLCRKC DISIHTVNAY VSSHQRFLLT GVKVGLEPLG PCASASSRKS 120 HEQRSPPILK ITPPSEGVLP VHTSGNGNFT PSRLPIVGNI PQCQFDQYLG MPDFNQNYGY 180 MDYGQSKAGN GKVGESASSP FLRDVDAEVA GDECFSTEVP DTCWAVPQIP SSPTASGLNW 240 PTKSIQNPFD AALLESDASY FPLQNIQDQQ SNGSGTKRSR RF* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:18182030}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC209533 | 0.0 | AC209533.1 Solanum lycopersicum DNA sequence from clone LE_HBa-140M1 on chromosome 12, complete sequence. | |||
GenBank | HG975524 | 0.0 | HG975524.1 Solanum lycopersicum chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004252027.1 | 0.0 | B-box zinc finger protein 22-like | ||||
Swissprot | Q9SYM2 | 3e-79 | BBX22_ARATH; B-box zinc finger protein 22 | ||||
TrEMBL | A0A3Q7JR20 | 0.0 | A0A3Q7JR20_SOLLC; Uncharacterized protein | ||||
STRING | Solyc12g005420.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2892 | 23 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G78600.1 | 1e-81 | light-regulated zinc finger protein 1 |