PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim11g073060.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 155aa    MW: 17369.1 Da    PI: 10.2848
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim11g073060.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.000943658123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        + C+ C+k+F++   L  H  +H
  Sopim11g073060.0.1 36 FACKTCNKRFPSFQALGGHRTSH 58
                        78**********99998888777 PP
2zf-C2H213.60.000197597123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        +kC++Cg+ F     L  H+r+H
  Sopim11g073060.0.1 75 HKCSICGMEFALGQALGGHMRRH 97
                        79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.31E-83697No hitNo description
PROSITE profilePS501579.8893663IPR007087Zinc finger, C2H2
SMARTSM003550.173658IPR015880Zinc finger, C2H2-like
PfamPF139122.4E-113660IPR007087Zinc finger, C2H2
PROSITE patternPS0002803858IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.5E-473100IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.2E-974100IPR007087Zinc finger, C2H2
SMARTSM003550.0527597IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.97275102IPR007087Zinc finger, C2H2
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MTTMKRSRED NGQVEAEAMA NCALMLLSRL NNNNDFACKT CNKRFPSFQA LGGHRTSHNK  60
KPKLLGETNQ KSKVHKCSIC GMEFALGQAL GGHMRRHRDE INKVTSHEKT IIPILHSSKR  120
ISIFGVNLNI TPNVDDLKLW PIEEAPSPVL RIFF*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755230.0HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004251306.11e-112zinc finger protein ZAT11-like
SwissprotQ9SLD47e-27ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A3Q7J2571e-109A0A3Q7J257_SOLLC; Uncharacterized protein
STRINGSolyc11g073060.1.11e-112(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.12e-29C2H2 family protein