PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim11g072060.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 541aa    MW: 60753.5 Da    PI: 8.5297
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim11g072060.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.47.8e-1495142148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g+W + Ed +l d+v+++G g+W+++ r+ g+ R++k+c++rw ++l
  Sopim11g072060.0.1  95 KGPWLKAEDAILRDYVAEYGEGNWSSVHRRTGLARCGKSCRLRWSNHL 142
                         79*******************************************996 PP
2Myb_DNA-binding52.61e-16148191146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         +g++T+eE++l+v  ++q G++ W++Ia++++ gRt++++k++w++
  Sopim11g072060.0.1 148 KGAFTQEEEQLIVAMHAQIGNK-WARIASEFP-GRTDNDIKNFWNT 191
                         799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.98990142IPR017930Myb domain
SuperFamilySSF466892.03E-2792189IPR009057Homeodomain-like
SMARTSM007177.1E-1294144IPR001005SANT/Myb domain
PfamPF002493.7E-1295142IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-2196150IPR009057Homeodomain-like
CDDcd001672.80E-997142No hitNo description
PROSITE profilePS5129424.35143197IPR017930Myb domain
SMARTSM007173.1E-16147195IPR001005SANT/Myb domain
PfamPF002499.1E-15148191IPR001005SANT/Myb domain
CDDcd001673.80E-11150193No hitNo description
Gene3DG3DSA:1.10.10.606.2E-23151196IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MKKCSRIYKI RSLITKRRVN SAIEFRNCLE AMRCRKRYLD QWAPNGRKTN KKKLHCRQLL  60
QLLSFRMTSE VGMNSTSVEE ANAGGNIRRG TPLKKGPWLK AEDAILRDYV AEYGEGNWSS  120
VHRRTGLARC GKSCRLRWSN HLKPYLKKGA FTQEEEQLIV AMHAQIGNKW ARIASEFPGR  180
TDNDIKNFWN TRLKRQRREE KYMLSPGVFF GEFSEDKQNK ELATSSSANS LPHLLPNNNV  240
EIPTAENRNF EPSQQLYPPR LLNNDFSSFL GTPATSLRDQ GLNSSWNTHS VPSTVHSSKR  300
TQGLESWFSN RNVDLSQAHH QYQNDGSFFT QSLGFSSLCT HNLTSNYHRS SASEIPGIQA  360
SSSEHRLKGK LELPSFQTPM TSWDSASSVP SIESSSTFIQ SPPNEYTDSC SLSPQSSDLL  420
HAILYGSQTP KASSSNSYQE TSRDVVPDSC PVLRQIQWGT NPDAITPSGH AITSVFSEYT  480
PSSGGSLEDH QSIAPFIGCN VNQEMANFTP TAGNNDTSND DLFSETDMYF SPSDWLRDLE  540
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26901961107B-MYB
1h8a_C3e-269319625127MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755230.0HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004251439.10.0transcription factor MYB97-like isoform X1
TrEMBLA0A3Q7J0M00.0A0A3Q7J0M0_SOLLC; Uncharacterized protein
STRINGSolyc11g072060.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20212358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26930.13e-55myb domain protein 97