PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim11g070070.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 336aa    MW: 38412.1 Da    PI: 7.0752
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim11g070070.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.72.3e-0990114126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         ykt+ C  f++ GtC+ G+ C+FaHg
  Sopim11g070070.0.1  90 YKTRMCAKFLE-GTCRNGEHCTFAHG 114
                         9**********.*************9 PP
2zf-CCCH25.71.9e-08149171325
                         S---SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                         +++C+ f+ + +C+yGd+C+F H
  Sopim11g070070.0.1 149 MKICKKFYNGEECPYGDKCNFLH 171
                         579******66************ PP
3zf-CCCH38.32.2e-12224250127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +kt++C+ +  tG+C++ drC+FaHg+
  Sopim11g070070.0.1 224 WKTKICSKWETTGQCPFRDRCHFAHGQ 250
                         8************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.1E-1586122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-987120IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-489115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.43289116IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-690114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-7146173IPR000571Zinc finger, CCCH-type
SMARTSM003560.0027146173IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.089146174IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-6149171IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-8149172IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-16219256IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-10220255IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.249223251IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5223250IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-8224250IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MTFSDQPQQP VPSHFMQMPF VGGDAEDVWS HSSMNHELFE SYSQFEHAPP FKRMREFDSN  60
SPNSAAFSAI NSRVNPPNLP GSKGTSHIFY KTRMCAKFLE GTCRNGEHCT FAHGVEDLRE  120
PPPNWQDLVR EKDRGAENWN DDQKIIHRMK ICKKFYNGEE CPYGDKCNFL HERPPKFKTD  180
MPRHRESSAI SIGTTGNRCD TELIEISKHG NADSDAVRIK PVYWKTKICS KWETTGQCPF  240
RDRCHFAHGQ SELQMPTGRV EMDMLTNSGP ITPRPFSIQP VDSSSATTLV NASMQEEKEE  300
KKIHKWKLSK KISRIYGDWI DDLVPPHLHP DNADN*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755230.0HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004251186.10.0zinc finger CCCH domain-containing protein 39-like
RefseqXP_010313443.10.0zinc finger CCCH domain-containing protein 39-like
SwissprotQ9LT817e-83C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A3Q7J1670.0A0A3Q7J167_SOLLC; Uncharacterized protein
STRINGSolyc11g070070.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA65532434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.11e-77C3H family protein