PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim11g069340.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 922aa    MW: 100708 Da    PI: 4.9056
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim11g069340.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.61.1e-08109136127
                         --S---SGGGGTS.--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartG.tCkyGdrCkFaHgp 27 
                         +kt lC++f+r+   C++G++C++aHg+
  Sopim11g069340.0.1 109 WKTTLCSYFRRNDgSCSHGESCRYAHGE 136
                         8**********756************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.8E-13102140IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.44E-7106141IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.694108137IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-5108136IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-6109136IPR000571Zinc finger, CCCH-type
SMARTSM003600.0074198265IPR000504RNA recognition motif domain
CDDcd005901.57E-8199264No hitNo description
Gene3DG3DSA:3.30.70.3304.5E-7202264IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549281.49E-8202281IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5168743.502328921IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533352.91E-47331356IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533352.91E-47388491IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533352.91E-47566683IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1502.3E-63580683IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF138475.0E-10627685IPR025714Methyltransferase domain
CDDcd024403.58E-7629683No hitNo description
Gene3DG3DSA:3.40.50.1502.3E-63800859IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF059583.7E-8806855IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533352.91E-47807860IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PROSITE patternPS012300815847IPR030390RNA methyltransferase TrmA, active site
Gene3DG3DSA:3.40.50.1502.3E-63896921IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533352.91E-47905920IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006396Biological ProcessRNA processing
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 922 aa     Download sequence    Send to blast
MSTETVNPEL NGEESSEKLH SPVIVKSELN GDDSSEHLQL PETLKTELNG EDSSEQLHSS  60
AIVKPELNGD ESSELVKLTE ALAEPTEKRK REGSETVTET EQKQQNPLWK TTLCSYFRRN  120
DGSCSHGESC RYAHGESELR VRPDNTWDPT SDRAKKMAKT AADDDGEKAE DKEEKCNDVM  180
MTEALDDDEC SSVSGLSKCL VNLPMKWSSD NLRCFLKEHG VTFKSAKKKK GMAVGFATFE  240
NAEQVKTAVK ELDGKPAGNK ILKVGDIIPR AFERKGNSAM SSFRTNQQGE KQTEAGDGLD  300
LTKISEETEA EDPVTSDSVL KGRCVRDVVT PLAKMPYADQ LEQKKSSLTR TLKTLTRNAR  360
KACPNGVPLP EWILKAREIG GLPCELEGII ESPLITGYRN KCEFSAGFSV LGKPTVGFQL  420
GNFREGVTAV EEPVDCPNVS RIACKYAAIF QEFLQQSTLP IWNRLNNTGF WRQLTVREGR  480
MPGKNVEVEN PSANISEVML IVQVSTLTFD DALVNDELQG LAKAFAMGAS SASPTLPLTA  540
LVVQDHTGIS NVAPADAPLR VLPFSREESY SELHADNAVA EAKIHDFING LKFCISPTAF  600
FQVNTLAAEK LYSLAGDWAS LGPDTLLFDV CCGTGTIGLT LANRVGMVVG IEMNASAVSD  660
AQRNAEINGI KNCRFICGKA EDVMGSVLKE YLASPAKVDG LLDIEEKKNQ ENTTSTEKTD  720
SIVNASKTDG ESSTGSENGK SMCIDQDTTP TENMYSTDRA AEPEEKTGLE CTNGKSLSES  780
SADDTTEPAT QLKKCSSDNL TTPVQHFKNV VAIVDPPRAG LHPTVIKLLR TNSRLRRLVY  840
ISCNPESLVA NAIELCTPSP DESEKGDNRN NRLWRKMSSA TLARHRTKSM PNSEPFKPVK  900
AMAVDLFPHS PHCELVMLLE R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xj1_A3e-18584690265371Uncharacterized RNA methyltransferase SP_1029
5xj2_A3e-18584690265371Uncharacterized RNA methyltransferase SP_1029
5xj2_B3e-18584690265371Uncharacterized RNA methyltransferase SP_1029
5xj2_C3e-18584690265371Uncharacterized RNA methyltransferase SP_1029
5xj2_D3e-18584690265371Uncharacterized RNA methyltransferase SP_1029
5zq0_A3e-18584690266372Uncharacterized RNA methyltransferase SP_1029
5zq1_A2e-18584690265371Uncharacterized RNA methyltransferase SP_1029
5zq8_A3e-18584690265371Uncharacterized RNA methyltransferase SP_1029
5zq8_B3e-18584690265371Uncharacterized RNA methyltransferase SP_1029
5zth_A3e-18584690266372Uncharacterized RNA methyltransferase SP_1029
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2124370.0AC212437.2 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence.
GenBankHG9755230.0HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004251126.10.0zinc finger CCCH domain-containing protein 24
SwissprotQ8L7S30.0C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A3Q7J0960.0A0A3Q7J096_SOLLC; Uncharacterized protein
STRINGSolyc11g069340.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA807488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.10.0C3H family protein
Publications ? help Back to Top
  1. Wang Y, et al.
    Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis.
    BMC Plant Biol., 2017. 17(1): p. 261
    [PMID:29268705]