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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Sopim11g069240.0.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
C2H2 |
| Protein Properties |
Length: 450aa MW: 50073.2 Da PI: 9.527 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sopim11g069240.0.1 | genome | CSHL | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 17.4 | 1.2e-05 | 32 | 54 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C++C+k F r nL+ H r H
Sopim11g069240.0.1 32 FVCEICNKGFQRDQNLQLHRRGH 54
89*******************88 PP
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| 2 | zf-C2H2 | 12.1 | 0.00062 | 109 | 131 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+kC++C+k + +s+ k H + +
Sopim11g069240.0.1 109 WKCEKCSKKYAVQSDWKAHSKIC 131
58*****************9876 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 450 aa
Download sequence Send
to blast |
MMSNDGLSCS MRDPNAEVIA LSPKSLMATN RFVCEICNKG FQRDQNLQLH RRGHNLPWKL 60
KQRNNKEVIK KKVYICPEKS CVHHDPSRAL GDLTGVKKHY SRKHGEKKWK CEKCSKKYAV 120
QSDWKAHSKI CGTREYKCDC GTLFSRKDSF ITHRAFCDAL AEESTRFTSI QTAVNLNNLR 180
NQLINGGIST NLQQQQQMSG NISQLMGLGS LDPSNQLNLD HGQKSRLPLW LHHENSNYGN 240
PNDFLSTPST TTSTLPHELV QVAPHANMLG SSSLHNNNNN NNNNQWFVND DGGDAIITTS 300
SSMLMPRVLK EEEENKTLSP MYYNNSHMSA TALLQIAAQI GSTRSNNNSP LFSNQFGLMT 360
SSSLSMKNSS SSSSASNVAI HENVQGNNGL LIGATNSTTF VANNANTLMM MQDKGKQGNL 420
TRDFLGGGRN EKRLFLQQTH EMAKFENNK*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that, together with BIB, regulates tissue boundaries and asymmetric cell division by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action (PubMed:17785527, PubMed:25829440). Binds DNA via its zinc fingers (PubMed:28211915, PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Confines CYCD6 expression to the cortex-endodermis initial/daughter (CEI/CEID) tissues (PubMed:25829440). Required for radial patterning and stem cell maintenance (PubMed:17785527). Counteracted by 'MAGPIE' (MGP) (PubMed:17785527). Binds to the SCR and MGP promoter sequences (PubMed:21935722). Controls position-dependent signals that regulate epidermal-cell-type patterning (PubMed:20356954). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:20356954, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440, ECO:0000269|PubMed:28211915}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Not regulated by SCR and SHR. {ECO:0000269|PubMed:21935722}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC212437 | 0.0 | AC212437.2 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence. |
| GenBank | HG975523 | 0.0 | HG975523.1 Solanum lycopersicum chromosome ch11, complete genome. |
| Publications
? help Back to Top |
- Moreno-Risueno MA, et al.
Transcriptional control of tissue formation throughout root development.
Science, 2015. 350(6259): p. 426-30
[PMID:26494755] - Hirano Y, et al.
Structure of the SHR-SCR heterodimer bound to the BIRD/IDD transcriptional factor JKD.
Nat Plants, 2017. 3: p. 17010
[PMID:28211915] - Kobayashi A,Miura S,Kozaki A
INDETERMINATE DOMAIN PROTEIN binding sequences in the 5'-untranslated region and promoter of the SCARECROW gene play crucial and distinct roles in regulating SCARECROW expression in roots and leaves.
Plant Mol. Biol., 2017. 94(1-2): p. 1-13
[PMID:28324206] - Long Y, et al.
In vivo FRET-FLIM reveals cell-type-specific protein interactions in Arabidopsis roots.
Nature, 2017. 548(7665): p. 97-102
[PMID:28746306] - Bustillo-Avendaño E, et al.
Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis.
Plant Physiol., 2018. 176(2): p. 1709-1727
[PMID:29233938]
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