PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopim11g064800.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | SRS | ||||||||
Protein Properties | Length: 380aa MW: 40708.9 Da PI: 8.4117 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 218.2 | 1.9e-67 | 135 | 303 | 5 | 154 |
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.........aeaaskrkrelkskkqsal 86 +++CqdCGnqakkdC+h+RCRtCCksrg+dC+thvkstWvpa++rrerq + a++++++++++ +++++k++r +s++++++ Sopim11g064800.0.1 135 STTCQDCGNQAKKDCTHRRCRTCCKSRGYDCNTHVKSTWVPASRRRERQLMGASTTTTTTNRNvvaagsssqSTSSAKKPRLVNSQTTTTA 225 679*********************************************99999988887777789999988777788899999999999** PP DUF702 87 sstklssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 s+t++s+++++++++tss lP +v+++avf+cvrv+svd+ge+e+aYq++v+igGhvfkG+LydqGl+e Sopim11g064800.0.1 226 SHTSTSNNTPPRSFDTSSshqdasfkgsLPGQVRAPAVFKCVRVTSVDEGEDEYAYQAVVKIGGHVFKGFLYDQGLDE 303 ****************999********************************************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 8.1E-63 | 135 | 302 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 7.7E-27 | 137 | 179 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 2.5E-29 | 254 | 301 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 380 aa Download sequence Send to blast |
MWSASASSRQ MQINYGLQPT EMGMFVVHPA SFHQNHENTI NFDPHGNSND NSNLSNTNTS 60 LGVGVGVIPL LTATPLSNMV TFDDQDLVRN NRGGNNGGFQ FFSNEQQQNS TTNYNTKNST 120 SSNNIILGGG GSISSTTCQD CGNQAKKDCT HRRCRTCCKS RGYDCNTHVK STWVPASRRR 180 ERQLMGASTT TTTTNRNVVA AGSSSQSTSS AKKPRLVNSQ TTTTASHTST SNNTPPRSFD 240 TSSSHQDASF KGSLPGQVRA PAVFKCVRVT SVDEGEDEYA YQAVVKIGGH VFKGFLYDQG 300 LDEPKDNNNF PNLSDLHLGA VATNEHLYAA STSGGGGLLG GGSNYGQYIV ICDLQLSTAK 360 VAFMPFLLGC IEPLKTLKK* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975523 | 0.0 | HG975523.1 Solanum lycopersicum chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010313236.1 | 0.0 | protein LATERAL ROOT PRIMORDIUM 1 isoform X1 | ||||
Swissprot | Q94CK9 | 4e-79 | LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1 | ||||
TrEMBL | A0A3Q7IYL5 | 0.0 | A0A3Q7IYL5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc11g064800.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7655 | 23 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G12330.4 | 2e-69 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
---|---|---|---|
|