 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sopim11g022480.0.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
| Family |
NAC |
| Protein Properties |
Length: 129aa MW: 14904.8 Da PI: 7.0877 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sopim11g022480.0.1 | genome | CSHL | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 25.8 | 3e-08 | 2 | 123 | 4 | 128 |
NAM 4 GfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLp.k.....kvkaeekew.y.fFskrdkkyatgkrknratksgyWk 84
G++Fh + +e ++++L+ +++ ++ +++d+y ePw + + ++a+++++ y +F++ ++ ++g Wk
Sopim11g022480.0.1 2 GYHFHSSAKERLQFFLRFVAKSAMNDD-GLiTTNLDVYGEeEPWGIYsQgvptgGLEADDDDYsYrYFIT-----------KKNNNNGNWK 80
99**********888887766666555.5525666*996549****733444442222222111212222...........22335799** PP
NAM 85 atgkdkevlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
++g++ +++ k ++ ++g+kk + + + e +W+m++y+l
Sopim11g022480.0.1 81 QQGEEIPIFFKignvsTSLVMGTKKKMHYV---H---EFGHWIMKQYKL 123
*********997666555569*******99...2...3569******97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 129 aa
Download sequence Send
to blast |
MGYHFHSSAK ERLQFFLRFV AKSAMNDDGL ITTNLDVYGE EEPWGIYSQG VPTGGLEADD 60
DDYSYRYFIT KKNNNNGNWK QQGEEIPIFF KIGNVSTSLV MGTKKKMHYV HEFGHWIMKQ 120
YKLSPVFF*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975523 | 0.0 | HG975523.1 Solanum lycopersicum chromosome ch11, complete genome. |
