PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim11g022480.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 129aa    MW: 14904.8 Da    PI: 7.0877
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim11g022480.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM25.83e-0821234128
                 NAM   4 GfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLp.k.....kvkaeekew.y.fFskrdkkyatgkrknratksgyWk 84 
                         G++Fh + +e ++++L+  +++  ++      +++d+y   ePw +  +      ++a+++++ y +F++           ++  ++g Wk
  Sopim11g022480.0.1   2 GYHFHSSAKERLQFFLRFVAKSAMNDD-GLiTTNLDVYGEeEPWGIYsQgvptgGLEADDDDYsYrYFIT-----------KKNNNNGNWK 80 
                         99**********888887766666555.5525666*996549****733444442222222111212222...........22335799** PP

                 NAM  85 atgkdkevlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++g++ +++ k     ++ ++g+kk + +    +   e  +W+m++y+l
  Sopim11g022480.0.1  81 QQGEEIPIFFKignvsTSLVMGTKKKMHYV---H---EFGHWIMKQYKL 123
                         *********997666555569*******99...2...3569******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510059.7481128IPR003441NAC domain
SuperFamilySSF1019412.09E-82123IPR003441NAC domain
PfamPF023653.7E-82123IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MGYHFHSSAK ERLQFFLRFV AKSAMNDDGL ITTNLDVYGE EEPWGIYSQG VPTGGLEADD  60
DDYSYRYFIT KKNNNNGNWK QQGEEIPIFF KIGNVSTSLV MGTKKKMHYV HEFGHWIMKQ  120
YKLSPVFF*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755230.0HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010312964.16e-91uncharacterized protein LOC104644586
TrEMBLA0A3Q7IU762e-91A0A3Q7IU76_SOLLC; Uncharacterized protein
STRINGSolyc11g022480.1.13e-92(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22191254