PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim11g020320.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 276aa    MW: 31757.7 Da    PI: 6.6828
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim11g020320.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.83.9e-151049241
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                         ie++ +r+ t+ +R++g+ KK +ELS+LCd+++++ii+ 
  Sopim11g020320.0.1 10 LIEDHKKRKSTLVNRKAGLVKKISELSILCDIKASMIIYE 49
                        59************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.801161IPR002100Transcription factor, MADS-box
SMARTSM004323.1E-15159IPR002100Transcription factor, MADS-box
CDDcd002662.67E-18268No hitNo description
SuperFamilySSF554551.83E-19292IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-8323IPR002100Transcription factor, MADS-box
PfamPF003198.4E-131150IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MGRSKIKMEL IEDHKKRKST LVNRKAGLVK KISELSILCD IKASMIIYEG NYNYQIWPND  60
SNDVQDLINL YKNQSQDGRT KRGKTLSNFF KNDEKKNNEF KVEKYPTWDS RFGYLSQIEL  120
QNLVGVVEKR IEKAKEKIEL LKSMNDQDPN IGSSSFSHQQ QIWNNNNLMN QTTQWPFSYV  180
NPFTHYDNFF QANIPISGAN SMGAGMDDGL LTIDDYQFNN TDYSTMIETE NCLVKNGIGS  240
SSIMHPMMNN GIDSSSTMEY PFIYNGYTHM PYGFQ*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755230.0HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019066449.10.0MADS-box protein SOC1-like
TrEMBLA0A3Q7ITG20.0A0A3Q7ITG2_SOLLC; Uncharacterized protein
STRINGSolyc11g020320.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63421232
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.11e-14M-type_MADS family protein