PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim11g016910.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NF-YC | ||||||||
Protein Properties | Length: 94aa MW: 10933.4 Da PI: 4.8555 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 51.3 | 2.5e-16 | 35 | 92 | 2 | 55 |
NF-YC 2 lksfwekq...iekatdfknhel.PlarikkilkadedvkmisaeaPvllskacelfi 55 +++fw++q +ek +fkn+ l ik+i+k+++dv++i++e+Pvll+kac++fi Sopim11g016910.0.1 35 MEMFWTDQereMEKIDNFKNNLLvSPNHIKNIMKTNKDVRRITSESPVLLAKACDFFI 92 789***99999********887624579*****************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 6.19E-7 | 53 | 92 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 5.2E-10 | 60 | 93 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.8E-6 | 61 | 93 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 94 aa Download sequence Send to blast |
MENNSEKSTV NATQSVDAYS TMSHLNIEKI EQEYMEMFWT DQEREMEKID NFKNNLLVSP 60 NHIKNIMKTN KDVRRITSES PVLLAKACDF FIQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000250, ECO:0000269|PubMed:17322342}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC246917 | 1e-150 | AC246917.1 Solanum lycopersicum chromosome 3 clone HBa0117I12, complete sequence. | |||
GenBank | AC246984 | 1e-150 | AC246984.1 Solanum lycopersicum chromosome 3 clone HBa0117I12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025884653.1 | 8e-62 | nuclear transcription factor Y subunit C-4-like | ||||
Swissprot | Q9FMV5 | 1e-13 | NFYC4_ARATH; Nuclear transcription factor Y subunit C-4 | ||||
TrEMBL | A0A3Q7ISN5 | 4e-62 | A0A3Q7ISN5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc11g016910.1.1 | 6e-63 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12872 | 5 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63470.2 | 6e-16 | nuclear factor Y, subunit C4 |