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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim11g005920.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NAC | ||||||||
Protein Properties | Length: 688aa MW: 76250.6 Da PI: 4.6348 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 154.1 | 6.4e-48 | 4 | 131 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrFhPtd el+++yLk+k++gkkl++ e i+e++iyk+ PwdLp k ++k+++ ewyfF++r++kya+g r nrat++gyWk+tgkd Sopim11g005920.0.1 4 LPPGFRFHPTDVELIMYYLKRKITGKKLHF-EGITELNIYKFSPWDLPdKcCYKSKDLEWYFFCPRERKYASGARMNRATDTGYWKTTGKD 93 79**************************99.78***************6545666777********************************* PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++v+ ++ vg ktLvf+ g+ p+g++tdWv+hey++ Sopim11g005920.0.1 94 RPVTY-CEKIVGSVKTLVFHLGHPPRGKRTDWVIHEYKF 131 *****.999****************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.5E-57 | 2 | 154 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.291 | 4 | 154 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.2E-24 | 5 | 130 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 688 aa Download sequence Send to blast |
MARLPPGFRF HPTDVELIMY YLKRKITGKK LHFEGITELN IYKFSPWDLP DKCCYKSKDL 60 EWYFFCPRER KYASGARMNR ATDTGYWKTT GKDRPVTYCE KIVGSVKTLV FHLGHPPRGK 120 RTDWVIHEYK FEDKESIDAG FAQDSYVLCK VFQKSGPGPK NGAQYGAPFK EEDWEDDKIP 180 AEPCTSDVFP APPGRTDKPS GSNAIRMVDP RSTSDWTSSE QSPSPIQPSV QKLPLDEPDD 240 EELPGEPNLS NVSSINWRPS DQLKAKPSNT FSALPILPEE QSCSVDTGLV NPGPGPSNAQ 300 MCTNEMALDD IDDEMIGLFA PFTEDTSLLS GGSEPNQKLD NFHQEVNAPP AACTDGNDIF 360 DGLGDIEFWA GVGQLEPDLT ASGGANHSLN PVILPQEAPQ DAAYMELNDL DIPLNHPAET 420 IGTGQLVPGY FCTPYNSNNG MQQLCFGSNS LGIVQDFGEH HLPALPESYT QQVNHPDMAY 480 NFLNNPNQGY NAATNFSVSS YKQPEDRRLD TQNLERGVQQ QKFYLSIFAL CDGSFLLVKA 540 EVTLGVDGCT NDALSVILGE QRKLYLSIFA FCGGPFILVK AEVTLGVDGC TNDALSVILG 600 NPSFTSTRVS NVDKADFSKK THEAFCFGFS LAFIRFSCVG MLWLNSLWEL YQFIVFKILL 660 NQVQFNSSGT SFHLHFHLSY IANYAVL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-45 | 4 | 154 | 15 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT013683 | 0.0 | BT013683.1 Lycopersicon esculentum clone 132505F, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004249904.1 | 0.0 | NAC domain-containing protein 82 isoform X2 | ||||
TrEMBL | A0A3Q7IPB7 | 0.0 | A0A3Q7IPB7_SOLLC; Uncharacterized protein | ||||
STRING | Solyc11g005920.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6050 | 23 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G09330.4 | 5e-83 | NAC domain containing protein 82 |