PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopim10g086260.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 275aa MW: 31906.1 Da PI: 5.4676 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.4 | 2.5e-16 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd ll +++ ++G g W++++ + g++R++k+c++rw++yl Sopim10g086260.0.1 13 KGSWTDEEDFLLRKCIDKYGEGKWHLVPIRAGLNRCRKSCRLRWLNYL 60 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 45.7 | 1.6e-14 | 66 | 110 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg + ++E +l+++++k+lG++ W++Ia +++ gRt++++k++w++ Sopim10g086260.0.1 66 RGDFEQDEVDLILRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNTN 110 78999*****************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-21 | 8 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.38 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.98E-27 | 10 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.9E-14 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-15 | 13 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.01E-9 | 15 | 60 | No hit | No description |
PROSITE profile | PS51294 | 23.262 | 61 | 115 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-21 | 64 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-13 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-13 | 66 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.21E-9 | 71 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 275 aa Download sequence Send to blast |
MNSTSMSSLG VRKGSWTDEE DFLLRKCIDK YGEGKWHLVP IRAGLNRCRK SCRLRWLNYL 60 RPHIKRGDFE QDEVDLILRL HKLLGNRWSL IAGRLPGRTA NDVKNYWNTN LLRKLNTTKI 120 VPREKINNKC GEISTKIEII KPQRRKYFSS TMKNVTNNNV ILDEEEHCKE IISEKQTPDA 180 SMDNVDPWWI NLLENCNDDI EEDEEVVINY EKTLTSLLHE EISPPLNIGE GNSMQQGQIS 240 HENWGEFSLN LPPMQQGVQN DDFSAEIDLW NLLD* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-23 | 13 | 117 | 7 | 110 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY348870 | 0.0 | AY348870.1 Lycopersicon esculentum anthocyanin 1 (ANT1) mRNA, complete cds. | |||
GenBank | EF433416 | 0.0 | EF433416.1 Solanum lycopersicum cultivar Ailsa Craig anthocyanin 1 (ANT1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001234417.1 | 0.0 | anthocyanin 1 | ||||
Swissprot | Q9FNV9 | 3e-61 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | Q6V7V0 | 0.0 | Q6V7V0_SOLLC; Anthocyanin 1 | ||||
STRING | Solyc10g086260.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G66370.1 | 4e-63 | myb domain protein 113 |
Publications ? help Back to Top | |||
---|---|---|---|
|