PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim10g080920.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 94aa    MW: 10983.3 Da    PI: 9.6947
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim10g080920.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.21.2e-10348244
                        SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding  2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrw 44
                        ++WTt   +++ +a  ++ ++     W+ Iar++g g++ ++++ ++
  Sopim10g080920.0.1  3 QNWTTKQNKKFEEALVMYDKDnngeKWHNIARYVG-GKSVEEVRRHY 48
                        79*********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007179.4E-7154IPR001005SANT/Myb domain
PROSITE profilePS5129313.116156IPR017884SANT domain
Gene3DG3DSA:1.10.10.603.8E-5358IPR009057Homeodomain-like
PfamPF002491.2E-7348IPR001005SANT/Myb domain
SuperFamilySSF466893.96E-13459IPR009057Homeodomain-like
CDDcd001677.87E-7452No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MSQNWTTKQN KKFEEALVMY DKDNNGEKWH NIARYVGGKS VEEVRRHYDL LLKDITQIEN  60
GQVPLPNYRT TSDQTNARGY ANEQRLLKNL KLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-245931193RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755221e-140HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004249320.14e-64protein RADIALIS-like 1
SwissprotF4JVB82e-30RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A3Q7JFL88e-63A0A3Q7JFL8_SOLLC; Uncharacterized protein
STRINGSolyc10g080920.1.11e-63(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.19e-33RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]