PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim10g080410.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bZIP
Protein Properties Length: 460aa    MW: 52119.4 Da    PI: 7.0479
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim10g080410.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.12.5e-10165194534
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeek 34 
                         k  rr+++NReAAr+sR RKka++++Le+ 
  Sopim10g080410.0.1 165 KTLRRLAQNREAARKSRIRKKAYVQQLETS 194
                         7789***********************974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.7E-8157208No hitNo description
SMARTSM003383.3E-6161221IPR004827Basic-leucine zipper domain
PfamPF077162.4E-8161203IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.749163207IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.55E-7165204No hitNo description
PROSITE patternPS000360168183IPR004827Basic-leucine zipper domain
PfamPF141441.3E-28257332IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MDSSNHQISF INQHQFFHDP RQQQQMENHK NHQISFGLSS ANPGNFINKE NNGGAYDLGE  60
LDQALFLYLD GQDPSSSSIQ DHRQNNYGMR PPTLNIFPSQ PMHIEPSSTK ANNNEQVSQA  120
TNGSKKSSQP SMDKSEPPKV TKGEGSRKVS TSSPEQDAPK TSDPKTLRRL AQNREAARKS  180
RIRKKAYVQQ LETSRIRLTQ LEHEIQRARS QGFHVGGNVL LGGDQGFQLI NRTNISSDAA  240
VFDLEYARWL EEHHRLICEL RNAVHEEQLQ EDELRIYVEN CVVHYDNIMN LKGMLAKSDV  300
FHLVSGLWKS PAERCFLWIG DFRPSEILKI IMCQIEALTE NQLLGMCGLQ KSTQEAEDAL  360
SQGLETLNQS LSDTIIASDA LILGNNNENM GNYMALAINQ LSTVEAFLRQ ADNLRHQTIH  420
RLHQILTTRQ AARCFIAIGD YFHRLRALSS LWLTRPRHE*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2442861e-150AC244286.4 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-20a14 map 10, complete sequence.
GenBankHG9755221e-150HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010312148.10.0bZIP transcription factor TGA10-like
SwissprotQ52MZ20.0TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLM1C6K40.0M1C6K4_SOLTU; Uncharacterized protein
STRINGSolyc10g080410.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22792145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.31e-178bZIP family protein