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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sopim10g080030.0.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
MIKC_MADS |
Protein Properties |
Length: 230aa MW: 25791.3 Da PI: 6.3738 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopim10g080030.0.1 | genome | CSHL | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 84.2 | 7.8e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
k+ien s rqvtfskRr+g++KKAeELSvLCdae+ vi+fs+t++ly ++s
Sopim10g080030.0.1 9 KKIENISSRQVTFSKRRAGLFKKAEELSVLCDAEIGVIVFSNTDRLYKFAS 59
68***********************************************86 PP
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2 | K-box | 55.2 | 3.1e-19 | 88 | 158 | 18 | 88 |
K-box 18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88
+ el+ Lk+e+ +L++ +++G++L+ L++keLqqLe+qL +++ ++++kK+++lle +e++ + +el
Sopim10g080030.0.1 88 EPELNSLKAEVAKLRKATGRMMGKELDGLDFKELQQLEHQLTEGILSVKNKKEQVLLELLEKSNLQIEELG 158
5699******************************************************9999887777765 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00432 | 4.6E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.964 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.87E-39 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 7.59E-30 | 2 | 77 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.8E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 9.935 | 84 | 175 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 2.1E-13 | 87 | 157 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 230 aa
Download sequence Send
to blast |
MGRGKIEMKK IENISSRQVT FSKRRAGLFK KAEELSVLCD AEIGVIVFSN TDRLYKFASS 60 KSSMEKIVER YNSSSHSFEH PMIENVVEPE LNSLKAEVAK LRKATGRMMG KELDGLDFKE 120 LQQLEHQLTE GILSVKNKKE QVLLELLEKS NLQIEELGHK SCNHYPENYE AARKISGGNT 180 TVICDFKSVE EENSDTSLSL GLSVATSQKK KNPQIECTSN DSENLMILD*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG975522 | 1e-100 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. |