PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim10g079070.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 362aa    MW: 39820.5 Da    PI: 6.2971
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim10g079070.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.21.7e-09204251455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++iN ++  L+el+P +    +k    a++L + +++++sLq
  Sopim10g079070.0.1 204 SHSLAERARREKINARMKLLQELVPGC----NKISGTAMVLDEIINHVQSLQ 251
                         8*************************9....89999***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.56E-9198255No hitNo description
SuperFamilySSF474592.88E-15198269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-15200268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.634200250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-7204251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-9206256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MDNLIECIEA GEARSENYGA RMGEIKDGFH QFGEEILSVT SEGGSSFTAL LGLPPNQAVE  60
LLVQSPETDK IASDKLAISE PHYRYPPPPP IFPSDIALID RASKFSVFAA AGNSPESNST  120
LSNSGSKSLF VKQEPLDSEC NHNSSPATSN PLVHQKSTKR KEREKKVKET SKKGKKSAND  180
TSEDGGEKLP YVHVRARRGQ ATDSHSLAER ARREKINARM KLLQELVPGC NKISGTAMVL  240
DEIINHVQSL QRQVEFLSMR LAAVNPRVDF NLESLFAAER SGSHVESNLQ DMVVPPIWAE  300
GQSSGNRNQY QHLWLIEGFH QPAWGRLEDN SSFVTPENSL LTYDSSANSA SLHPNQLKME  360
L*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2442980.0AC244298.9 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-22l14 map 10, complete sequence.
GenBankAC2445880.0AC244588.6 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-44j8 map 10, complete sequence.
GenBankHG9755220.0HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004249191.10.0transcription factor bHLH48
TrEMBLA0A3Q7JEW40.0A0A3Q7JEW4_SOLLC; Uncharacterized protein
STRINGSolyc10g079070.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40292342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.21e-72bHLH family protein