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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sopim10g078720.0.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
G2-like |
Protein Properties |
Length: 403aa MW: 45312.1 Da PI: 6.3149 |
Description |
G2-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopim10g078720.0.1 | genome | CSHL | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | G2-like | 101.1 | 7.5e-32 | 225 | 279 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
k+r+rWt++LH+rFve+v++LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR
Sopim10g078720.0.1 225 KARIRWTQDLHDRFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRN 279
68****************************************************6 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 403 aa
Download sequence Send
to blast |
MSIQNYELAS DCNLEFPQMG FCFQPESSVE NGCQQQQQPN FWPSTDSSSS RTIISRIGSS 60 PSAFFATERY LGLTQYDYQD NNNSCTQLSK NLDPQTTSYT QQCGNGFSAD SSARVDTDFP 120 KISMPSFIRS QFSSSQPFGP EGLYGNPFSN LSEKERILLL KSKLFREIDS SNRQPASIPF 180 QGNQDYGVSN NTCGFNLVHI RQQSGSQPAN SFNNSGCSGG SLSSKARIRW TQDLHDRFVE 240 CVNRLGGADK ATPKAILKLM DSEGLTIFHV KSHLQKYRNA KFIPESTEGR SGKTDCPNNV 300 TQIDSKTGMQ IKEALHMQLE VQRRLHEQLE IQRKLQLRIE EQGEQLKKIF EQQQQTTRSL 360 LETRNSSISS PADQFTPHED EVFAAESFNN THFQSNISYN DM*
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
6j4k_A | 4e-23 | 225 | 282 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-23 | 225 | 282 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 4e-23 | 225 | 282 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 4e-23 | 225 | 282 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 4e-23 | 225 | 282 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 4e-23 | 225 | 282 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-23 | 225 | 282 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-23 | 225 | 282 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-23 | 225 | 282 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-23 | 225 | 282 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-23 | 225 | 282 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-23 | 225 | 282 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC244580 | 0.0 | AC244580.4 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-40g6 map 10, complete sequence. |
GenBank | HG975522 | 0.0 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. |