PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim10g076390.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

BES1

Protein Properties

Length: 181aa MW: 20389 Da PI: 8.5834

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim10g076390.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	110.8	2.3e-34	36	105	4	75
DUF822 4 grkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskp 75 r p+ +Er +nk+RE+ RR +a ki+aGLRa+Gnyklpk+aD n+ l ALc+eAGw ve+DGt k p Sopim10g076390.0.1 36 FRYPSDRERQKNKQREKNRRRVAHKIFAGLRAHGNYKLPKHADTNDLLMALCKEAGWHVEEDGTIKGK--DP 105 5899************************************************************7543..33 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	2.8E-31	37	124	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MGEDKKISGV RGCIKTSRGP WLVHRTAKDG SVVTRFRYPS DRERQKNKQR EKNRRRVAHK 60 IFAGLRAHGN YKLPKHADTN DLLMALCKEA GWHVEEDGTI KGKDPVKDLP RLIDVDSAQV 120 SMEDQTKEGD YCKCEDQIKN GEYYCKCEVD MNNVETEKGR PEGSLTSSAF DVNLTLSLSS 180 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	1e-12	37	99	372	434	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	1e-12	37	99	372	434	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	1e-12	37	99	372	434	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	1e-12	37	99	372	434	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975522	1e-173	HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010327721.1	1e-133	protein BRASSINAZOLE-RESISTANT 2-like
Swissprot	Q9S7F3	1e-14	BEH1_ARATH; BES1/BZR1 homolog protein 1
TrEMBL	A0A3Q7IIT4	1e-132	A0A3Q7IIT4_SOLLC; Uncharacterized protein
STRING	Solyc10g076390.1.1	1e-133	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6204	21	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19350.6	1e-16	BES1 family protein