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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim10g075030.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | B3 | ||||||||
Protein Properties | Length: 880aa MW: 97203.3 Da PI: 6.903 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.9 | 1.9e-18 | 322 | 422 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+kvl+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ Sopim10g075030.0.1 322 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD- 410 99**************************555567778***************9989999999***9.********************876. PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 e++l+++++++ Sopim10g075030.0.1 411 PEGKLLMGFRKA 422 888888888765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.0E-29 | 314 | 423 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.22E-19 | 319 | 421 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.95E-22 | 320 | 421 | No hit | No description |
Pfam | PF02362 | 6.5E-16 | 322 | 422 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.9E-20 | 322 | 423 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.152 | 322 | 423 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 14.044 | 586 | 636 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 6.0E-12 | 591 | 633 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:2000034 | Biological Process | regulation of seed maturation | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 880 aa Download sequence Send to blast |
MESKICMNGL CGTTSSIEWK KGWPLRSGEF ATLCDKCGNA YEQLLFCDLF HSEDTGWREC 60 ISCGKRLHCG CIASSSLLEL LDSGGINCIS CVRSCQQHAT PNHEKPKAFG TSISNSVGET 120 ASTSLGSQIN GSEPNKREGS DSIDPALLLL HQNDNTNSPI GQIKMEETFH PAGESGSTFS 180 SNLFQASAEF SKNAKLDSYN GYKGVVEIHG STVQTNLSIA LSAPSPNSKL FPTTLDEGDL 240 NKTISSLQQG SRSRNLLPKP PKSASALGPE MNAGIISQIR VARPPVEGRI KNQLLPRYWP 300 RITDQELQQI SGDSNSTIIP LFEKVLSASD AGRIGRLVLP KACAEAYFPP ISQPEGLPLR 360 IQDVKGKEWV FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA GDTVTFSRMD PEGKLLMGFR 420 KASTVKITQE NRLSAIPKNV FSTEPTSFSA MPENLPLMSG YSGLLQSFKG SRESSVNLSS 480 KHFNSGDFSW YLTEKNGGRN ADGAFSPSMP VSERKRSRNI GSKSKRLLID AHDALELKLS 540 WEELQDMLRP PLSVQPTTVT IEDQEFEEYE QPPVLGKRSI FTVRLSGEQE QWAQCDNCFK 600 WRKLPADYLL PPHWTCQDNI SDHSRSSCSI PDDLTPRELE NLFKMDKDFK KQRSAAGQRI 660 TQAHDSSDLD SQANGISIAG DLGEPGPASV ATTTKHPRHR PGCSCIVCIQ PPSGKGKHNP 720 TCTCNVCMTV KRRFKTLMMR KKKRQSEREA ELGQRNQLMW SSKEETEVDS FSRPVKPEVD 780 PSEKERSGSE TLARGHSSYQ LQKLPEITCL PLETYLRQNG LTSLVSEQQG SSGSQGLPQD 840 TRESDLRVQE DLCLASTAQE QEKDVPKENS EPDQTGKDQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 1e-67 | 300 | 423 | 2 | 125 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 730 | 741 | KRRFKTLMMRKK |
2 | 730 | 743 | KRRFKTLMMRKKKR |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC254745 | 0.0 | AC254745.4 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-30h11 map 10, complete sequence. | |||
GenBank | HG975522 | 0.0 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004249040.1 | 0.0 | B3 domain-containing transcription repressor VAL2 isoform X2 | ||||
Swissprot | Q6Z3U3 | 0.0 | Y7797_ORYSJ; B3 domain-containing protein Os07g0679700 | ||||
TrEMBL | A0A2G2YL69 | 0.0 | A0A2G2YL69_CAPAN; Uncharacterized protein | ||||
STRING | Solyc10g075030.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1491 | 23 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 0.0 | HSI2-like 1 |
Publications ? help Back to Top | |||
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