PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim10g054010.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bZIP
Protein Properties Length: 164aa    MW: 18728.9 Da    PI: 4.9973
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim10g054010.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.31e-103678547
                        CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47
                        ++ +r+++NRe+A rsR RK++ ++ L     +L +eN +   
  Sopim10g054010.0.1 36 RKRKRMISNRESAWRSRMRKQKHLDDLMSQLSNLMKENNEILT 78
                        6789**********************************86554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.0E-143296IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.7263497IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.1E-1036108No hitNo description
PfamPF001702.0E-83677IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.04E-123688No hitNo description
CDDcd147023.30E-153787No hitNo description
PROSITE patternPS0003603954IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MASSSGTSSG SGLGSGSYTL LNSGSEEDLQ QLMDERKRKR MISNRESAWR SRMRKQKHLD  60
DLMSQLSNLM KENNEILTNM SVTTQNYLNI EAENSILRAQ VSELKQRFES LTKITSVLSY  120
NGNINEISND QIFHESYLVD ALIQNEFWND MYHPIMTADI MQY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13556RKRKRMISNRESAWRSRMRKQK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755220.0HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019225641.11e-60PREDICTED: bZIP transcription factor 11-like
SwissprotC0Z2L56e-37BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A3Q7II011e-114A0A3Q7II01_SOLLC; Uncharacterized protein
STRINGSolyc10g054010.1.11e-114(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53724123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.11e-35basic leucine-zipper 44
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]