PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim10g018510.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 392aa MW: 43366.8 Da PI: 5.4573 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 47.6 | 2.9e-15 | 223 | 270 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++hn+ Er+RRd+iN+++ +L++l+P++ K + a++L +++eY+k+L+ Sopim10g018510.0.1 223 ATHNQSERKRRDKINQRLKTLQKLVPTS-----SKTDTASMLDEVIEYLKQLR 270 58*************************8.....6*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.70E-16 | 217 | 274 | No hit | No description |
PROSITE profile | PS50888 | 17.339 | 220 | 269 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.06E-18 | 223 | 292 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.1E-13 | 223 | 269 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.5E-17 | 223 | 279 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.7E-16 | 226 | 275 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MDYEVAELKW EKGEVVMHGL GPPGVPCYYK PLSTPSPTKY TWDDKPHAAA GGTLESIVNQ 60 ATTHNIDIGD EGGDDDDLVS WFDDCLPETS MDIVAVVPTS CTNYNQQVPP STRVASCSGD 120 AEMARVGMGS SFEEISEDFE NQEAKNLIGS MVYEGKNNTV SPGETSLGEE RVLTTTSTFK 180 HNKRKTLNNH DSRGQESRDN EDEDEKKRSK ISSFSTKRCR VAATHNQSER KRRDKINQRL 240 KTLQKLVPTS SKTDTASMLD EVIEYLKQLR AQVKAMSMMI HVNMQPPPMM LPNMAFQQQQ 300 QQFQMSMMGM ARPIDVNALS SPNITTIPSI LHTTAPSNFN NPPIASPGAD PLASLVAVRQ 360 LSQPMTMDAY SRMAALYQQY LQSNANLGFK N* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 228 | 233 | ERKRRD |
2 | 229 | 234 | RKRRDK |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC244515 | 0.0 | AC244515.3 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-27m10 map 10, complete sequence. | |||
GenBank | HG975522 | 0.0 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019071429.1 | 0.0 | transcription factor UNE10-like | ||||
TrEMBL | A0A3Q7ID06 | 0.0 | A0A3Q7ID06_SOLLC; Uncharacterized protein | ||||
STRING | Solyc10g018510.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4367 | 21 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00050.1 | 1e-62 | bHLH family protein |