 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sopim10g018110.0.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
| Family |
M-type_MADS |
| Protein Properties |
Length: 185aa MW: 20762.4 Da PI: 6.5469 |
| Description |
M-type_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sopim10g018110.0.1 | genome | CSHL | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 44.6 | 1.9e-14 | 16 | 65 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
+ien+s r +tfskRr g+ KKA EL Cd+ +++ s++g y +ss
Sopim10g018110.0.1 16 KIENESARLTTFSKRRSGLYKKACELVRECDVALGIVMSSPKGIPYSFSS 65
79*****************************************9999986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 185 aa
Download sequence Send
to blast |
MEHKKTAGRQ KISLAKIENE SARLTTFSKR RSGLYKKACE LVRECDVALG IVMSSPKGIP 60
YSFSSPTSNV VIDRFINPTA NLSSSDRLVA AEARKKVSQF YDILNELDER EKIANEKLDR 120
MNEARDLGWW ESIDQLNVRD VKKLEAWLIS GEFKLNEHLE QLENGASSSS QIPSDDANIS 180
PNVF*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | CU468237 | 0.0 | CU468237.3 S.lycopersicum DNA sequence from clone LE_HBa-303A6, complete sequence. |
| GenBank | HG975522 | 0.0 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. |
