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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim10g018000.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 700aa MW: 79650.1 Da PI: 6.3646 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 47.7 | 2.6e-15 | 27 | 77 | 6 | 56 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ e +++Le+++e +r p++++r +LA ++gL+ +qVk WFqN+R++ k Sopim10g018000.0.1 27 RHSVEATQRLEAFYEICRFPDEDQRNQLAFEVGLDPDQVKGWFQNKRTQSK 77 5678999*****************************************998 PP | |||||||
2 | START | 103.7 | 3.2e-33 | 236 | 453 | 6 | 205 |
HHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS START 6 aaqelvkkalaeepgWvkss.....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 a +el+ ++ +++p+W kss +++ + + ++f+ s+ ++e +r +gvv+m+ +l + + + +W ++++ ka++ Sopim10g018000.0.1 236 AINELLGLVHVDKPLWIKSSvdegwTIHRE-GYDTTFPNSNRpyksstARIESSRYFGVVPMTGIDLINNFRNPI-KWMNMFPtivtKAKI 324 678999999***********8887633333.333444444435888889************************99.*************** PP EEEECTT...EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEE CS START 82 levissg...galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwv 167 ++v++sg +qlm+ ++ lsplv R+fvf+R+++ql+ +w+ vdvS d ++ + +s++ ++pSg+li++ ++g+s v w+ Sopim10g018000.0.1 325 VDVLDSGnteVSIQLMYEKMHILSPLVEaREFVFIRCCKQLQPTTWIMVDVSYDLFKEIQIcAPSYAW--KFPSGCLIQEIGDGRSVVAWI 413 ********999****************99***************************999999999987..********************* PP E-EE--SSXX..HHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 168 ehvdlkgrlp..hwllrslvksglaegaktwvatlqrqce 205 ehv +++ l+r+l+ ++++ ga +w atl+r e Sopim10g018000.0.1 414 EHVQIDEKCHevNHLFRHLLCRRHIYGAERWIATLERTSE 453 ***9999876569**********************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.2E-15 | 6 | 77 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.67E-14 | 13 | 79 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.188 | 19 | 79 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-14 | 21 | 83 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.97E-12 | 22 | 79 | No hit | No description |
Pfam | PF00046 | 7.4E-13 | 27 | 77 | IPR001356 | Homeobox domain |
PROSITE profile | PS50848 | 34.282 | 222 | 457 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.02E-21 | 225 | 456 | No hit | No description |
CDD | cd08875 | 3.50E-71 | 226 | 453 | No hit | No description |
SMART | SM00234 | 6.0E-17 | 231 | 454 | IPR002913 | START domain |
Pfam | PF01852 | 4.2E-27 | 236 | 453 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.4E-6 | 258 | 423 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 8.24E-8 | 467 | 584 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 700 aa Download sequence Send to blast |
MADSGEKHVG ESSTRRNASK RKGQGQRHSV EATQRLEAFY EICRFPDEDQ RNQLAFEVGL 60 DPDQVKGWFQ NKRTQSKTKD ERSDNKTLRN ENETLRLEII AMKEAIKNNM GSQSDGPSIG 120 EEERARNVEK MKINIQKLRE ERKRISNIIS SYDGKSFVMD SNSTLESLAD KSLLKQTICG 180 SSIEHTSSGN NNDIYNARIR MNNIPIISKL EQENYGFHHD DSNGEKSIIF EIVVPAINEL 240 LGLVHVDKPL WIKSSVDEGW TIHREGYDTT FPNSNRPYKS STARIESSRY FGVVPMTGID 300 LINNFRNPIK WMNMFPTIVT KAKIVDVLDS GNTEVSIQLM YEKMHILSPL VEAREFVFIR 360 CCKQLQPTTW IMVDVSYDLF KEIQICAPSY AWKFPSGCLI QEIGDGRSVV AWIEHVQIDE 420 KCHEVNHLFR HLLCRRHIYG AERWIATLER TSERYNNEMS TTGFKGEGLK NAMNISQRMV 480 KRFCEILSMT DKLDFSTSLL LNNEDRVSIR KNKETTQSKG FIVTAATSLW VPLSFETIFD 540 LLNDINTRYQ WDAFSGGNYT AEMDRLSTGT STKNCITFIE LNTTRENNMV LLQESGIDKM 600 GAFLIYGLID STAYKSFLSG GNAEEVFILP SGIIISPDGR LTDNNENVKN GSILTVAFQK 660 LNFANNSISQ DQHEEEMAYI HNLLSYTVLK IKALLGCSD* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC244550 | 0.0 | AC244550.5 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-39i10 map 10, complete sequence. | |||
GenBank | HG975522 | 0.0 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010327374.2 | 0.0 | homeobox-leucine zipper protein HDG8-like | ||||
TrEMBL | K4CYS4 | 0.0 | K4CYS4_SOLLC; Uncharacterized protein | ||||
STRING | Solyc10g018000.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1021 | 17 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03260.1 | 1e-144 | homeodomain GLABROUS 8 |