 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sopim10g012380.0.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
| Family |
M-type_MADS |
| Protein Properties |
Length: 150aa MW: 17086.7 Da PI: 5.2929 |
| Description |
M-type_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sopim10g012380.0.1 | genome | CSHL | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 22.7 | 1.3e-07 | 3 | 26 | 18 | 41 |
HHHHHHHHHHHHHHT-EEEEEEE- CS
SRF-TF 18 ngilKKAeELSvLCdaevaviifs 41
+ ++K A+ L +LC++ +a++ifs
Sopim10g012380.0.1 3 KSLFKRANDLAILCGIHIAILIFS 26
689********************9 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 150 aa
Download sequence Send
to blast |
MQKSLFKRAN DLAILCGIHI AILIFSVGRQ PIFFGMPDVE TVVQKFMEAN HPTAPRFYMK 60
IKKTEEENKE KGKSVEDNIA HRQLEDFESP YLGSLLKLYQ GLTEFEDLLN KEIDPTQLNQ 120
EIEKHEDPKI VSKMNVASSS YLPTDMLSP*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC233127 | 0.0 | AC233127.23 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-201c12 map 10, complete sequence. |
| GenBank | HG975522 | 0.0 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. |
