 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sopim10g012200.0.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
| Family |
M-type_MADS |
| Protein Properties |
Length: 168aa MW: 19139.2 Da PI: 8.9788 |
| Description |
M-type_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sopim10g012200.0.1 | genome | CSHL | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 31.7 | 1.9e-10 | 27 | 50 | 17 | 40 |
HHHHHHHHHHHHHHHT-EEEEEEE CS
SRF-TF 17 rngilKKAeELSvLCdaevaviif 40
++ ++KKA+ LS+LC+++va+ii+
Sopim10g012200.0.1 27 QKALFKKASDLSILCGIQVAIIIL 50
689*******************96 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 168 aa
Download sequence Send
to blast |
MESKNSNVDL AVAKDKRAEG GKILKMQKAL FKKASDLSIL CGIQVAIIIL FINRQPIVFG 60
KPDAELVIHQ FIEANHPTAP RFYMKMKKKE EENKKKGKSV EDDIQSQDFE SPYLESLLKL 120
YEGLREFENQ LTKEMDLKQL NQEIEKHKDP KLMNVASSST LPTNFNL*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975522 | 0.0 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. |
