PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim10g012200.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 168aa MW: 19139.2 Da PI: 8.9788 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 31.7 | 1.9e-10 | 27 | 50 | 17 | 40 |
HHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 17 rngilKKAeELSvLCdaevaviif 40 ++ ++KKA+ LS+LC+++va+ii+ Sopim10g012200.0.1 27 QKALFKKASDLSILCGIQVAIIIL 50 689*******************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 9.377 | 3 | 63 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.96E-10 | 23 | 86 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-8 | 25 | 50 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MESKNSNVDL AVAKDKRAEG GKILKMQKAL FKKASDLSIL CGIQVAIIIL FINRQPIVFG 60 KPDAELVIHQ FIEANHPTAP RFYMKMKKKE EENKKKGKSV EDDIQSQDFE SPYLESLLKL 120 YEGLREFENQ LTKEMDLKQL NQEIEKHKDP KLMNVASSST LPTNFNL* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975522 | 0.0 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004248432.1 | 1e-118 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A3Q7IDE0 | 1e-117 | A0A3Q7IDE0_SOLLC; Uncharacterized protein | ||||
STRING | Solyc10g012200.1.1 | 1e-117 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2297 | 12 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 6e-10 | AGAMOUS-like 62 |