PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim10g009080.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family SBP
Protein Properties Length: 136aa    MW: 15746.4 Da    PI: 7.831
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim10g009080.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP136.95.9e-4351127278
                         -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         Cqve+C+ad+ +ak+yhrrhkvCe+h+kap+vl++gl+qrfCqqCsrfh+l efD++k+sCrrrLa+hnerrrk+++
  Sopim10g009080.0.1  51 CQVEECTADMVNAKTYHRRHKVCEFHAKAPEVLIDGLRQRFCQQCSRFHQLAEFDDAKKSCRRRLAGHNERRRKSAQ 127
                         **************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0375754.2E-571135IPR017238Squamosa promoter-binding protein
Gene3DG3DSA:4.10.1100.103.4E-3444112IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.22348125IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.61E-3949128IPR004333Transcription factor, SBP-box
PfamPF031105.8E-3351124IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MENNKWEGKR SMEEDDDEED EDVVEDTKRK RVLTRSGRKV STAEGSRQPS CQVEECTADM  60
VNAKTYHRRH KVCEFHAKAP EVLIDGLRQR FCQQCSRFHQ LAEFDDAKKS CRRRLAGHNE  120
RRRKSAQDYP GEGSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-37511241184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2547781e-161AC254778.2 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-16p1 map 10, complete sequence.
GenBankHG9755221e-161HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001307609.11e-96squamosa promoter binding-like protein 3
SwissprotQ387417e-55SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBLA0A3Q7IBL63e-95A0A3Q7IBL6_SOLLC; Squamosa promoter-binding-like protein
STRINGSolyc10g009080.2.15e-96(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74924105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.12e-43squamosa promoter binding protein-like 3
Publications ? help Back to Top
  1. Klein J,Saedler H,Huijser P
    A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.
    Mol. Gen. Genet., 1996. 250(1): p. 7-16
    [PMID:8569690]