PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim10g008260.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 227aa    MW: 26345.4 Da    PI: 8.8753
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim10g008260.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.72.1e-081964654
                        HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                        + +E++RR+ +++ +++L +l+P++   + + ++  +    Av+YI +L
  Sopim10g008260.0.1 19 KYVEKNRRNYMKKLYNQLHSLIPTS---KETIMTVPDQIDAAVNYIENL 64
                        568**********************...******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.3881364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-91583IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-81784IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-52064IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MERRMKSKLP PAGPKIERKY VEKNRRNYMK KLYNQLHSLI PTSKETIMTV PDQIDAAVNY  60
IENLKMNLEM NNKYLEELKM GLKKAQSFNP TNEPGPITKS QPQIEFHEMG PNMVVVLITS  120
LNNIATFNNI IRLCYVEGVE VVSTRFELNG NSTLQISHET TKINRSSAME LIGTNLCDKM  180
KELIYGPSYM ESQLHLWDYK IEFDTLEYYL LPTRSKNPNM YSYMQN*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755220.0HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010327075.11e-167transcription factor bHLH162-like
TrEMBLA0A3Q7IB621e-165A0A3Q7IB62_SOLLC; Uncharacterized protein
STRINGSolyc10g008260.1.11e-166(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52971427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.18e-16bHLH family protein