PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim10g008160.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family G2-like
Protein Properties Length: 193aa    MW: 20937.2 Da    PI: 10.6866
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim10g008160.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like25.13.8e-081213656
             G2-like 36 mkvkgLtlehvkSHLQkYRla 56
                        m  +gLt+++++SHLQkYR +
  Sopim10g008160.0.1  1 MATHGLTRHNIASHLQKYRAH 21
                        8899***************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.8E-7123IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MATHGLTRHN IASHLQKYRA HRKHLLAREA EAASLNHRKQ MYSGATTIGG GGKRILMNPW  60
PAPPTMGFPP MAHHVRPLHV WGHPHVNNSF WHPHYQRVSN SLVPGTPCFS APITSARFAA  120
PLMVPGIPPS PAIIKVDTVA SDLHPSNESI DAAIEDVLSK PQLPLPIGLK PPSIDSVLNE  180
LQRQGITKIP PT*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. {ECO:0000269|PubMed:19808806}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:11340194}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ3164590.0JQ316459.1 Solanum lycopersicum golden2-like protein (GLK2) mRNA, complete cds.
GenBankJX1638970.0JX163897.1 Solanum lycopersicum cultivar Ailsa Craig golden 2-like 2 transcription factor (GLK2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001266252.11e-139transcription factor GLK2
SwissprotQ5Z5I42e-36GLK1_ORYSJ; Probable transcription factor GLK1
TrEMBLI6RHK01e-137I6RHK0_SOLLC; Golden 2-like 2 transcription factor
STRINGSolyc10g008160.2.11e-138(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25322356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.24e-34GBF's pro-rich region-interacting factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang Y, et al.
    A highly efficient rice green tissue protoplast system for transient gene expression and studying light/chloroplast-related processes.
    Plant Methods, 2011. 7(1): p. 30
    [PMID:21961694]