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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sopim10g007970.0.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
WRKY |
Protein Properties |
Length: 256aa MW: 28597.3 Da PI: 7.4969 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopim10g007970.0.1 | genome | CSHL | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 92.5 | 3.2e-29 | 88 | 145 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
D +WrKYGqK++kgs++pr+YYrC+s gCp+kk+ver+++dp+v++itY++ Hnh+
Sopim10g007970.0.1 88 DSSTWRKYGQKPIKGSPYPRGYYRCSSLkGCPAKKQVERCHHDPNVLIITYSSGHNHP 145
6779**********************998****************************7 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 256 aa
Download sequence Send
to blast |
MEGVLQKDPY LHKQEDSFQR HSIKVKRYKA ENSVEGSVSN DDQTTEVNMP LPRKLSKKGA 60 KKRVISVPIK DCDISRSNYK GEIYPPFDSS TWRKYGQKPI KGSPYPRGYY RCSSLKGCPA 120 KKQVERCHHD PNVLIITYSS GHNHPLPAAA TKHRHPTTSF AATNTEQSTI FTDQPENDFI 180 MAEVGAGELL GCFSYVGPTL LECTSPTMVG STWVDDDVAF MLPIGEEDQS LFGDLGELPE 240 CSMVFRRYNR IVDGI*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG975522 | 0.0 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. |