PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim10g007970.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 256aa    MW: 28597.3 Da    PI: 7.4969
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim10g007970.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.53.2e-2988145359
                         -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         D  +WrKYGqK++kgs++pr+YYrC+s  gCp+kk+ver+++dp+v++itY++ Hnh+
  Sopim10g007970.0.1  88 DSSTWRKYGQKPIKGSPYPRGYYRCSSLkGCPAKKQVERCHHDPNVLIITYSSGHNHP 145
                         6779**********************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-3080147IPR003657WRKY domain
SuperFamilySSF1182905.1E-2682147IPR003657WRKY domain
SMARTSM007742.8E-3286146IPR003657WRKY domain
PfamPF031067.9E-2588145IPR003657WRKY domain
PROSITE profilePS5081128.96688147IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MEGVLQKDPY LHKQEDSFQR HSIKVKRYKA ENSVEGSVSN DDQTTEVNMP LPRKLSKKGA  60
KKRVISVPIK DCDISRSNYK GEIYPPFDSS TWRKYGQKPI KGSPYPRGYY RCSSLKGCPA  120
KKQVERCHHD PNVLIITYSS GHNHPLPAAA TKHRHPTTSF AATNTEQSTI FTDQPENDFI  180
MAEVGAGELL GCFSYVGPTL LECTSPTMVG STWVDDDVAF MLPIGEEDQS LFGDLGELPE  240
CSMVFRRYNR IVDGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-19881471674WRKY transcription factor 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755220.0HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004248483.10.0probable WRKY transcription factor 65
TrEMBLA0A3Q7IB321e-148A0A3Q7IB32_SOLLC; Uncharacterized protein
STRINGSolyc10g007970.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74682232
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.15e-56WRKY DNA-binding protein 65