PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim10g005680.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | WRKY | ||||||||
Protein Properties | Length: 704aa MW: 76095.7 Da PI: 4.9982 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 76.3 | 3.8e-24 | 296 | 354 | 1 | 60 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 ++Dg+nW KYG +vkgse+prs+Y+Ct+++C vkk++ r + +++v+e++Y+g H+h+k Sopim10g005680.0.1 296 VEDGHNWIKYGENQVKGSEYPRSFYKCTHPNCLVKKEIARYH-QGHVTEVIYNGAHKHPK 354 58***************************************9.9**************85 PP | |||||||
2 | WRKY | 97.6 | 8.1e-31 | 509 | 566 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vkg+++prsYY+Ct +gC+v+k+vers d+ v++ Y g+Hnh+ Sopim10g005680.0.1 509 EDGYRWRKYGQKLVKGNPNPRSYYKCTNSGCSVRKHVERSPLDQMSVITSYDGKHNHD 566 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 18.062 | 291 | 355 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 6.9E-20 | 294 | 355 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.22E-19 | 295 | 355 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.6E-21 | 296 | 354 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.3E-19 | 297 | 353 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.1E-32 | 493 | 568 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.48E-26 | 501 | 568 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 35.117 | 503 | 568 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.6E-34 | 508 | 567 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.1E-24 | 509 | 566 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0030010 | Biological Process | establishment of cell polarity | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 704 aa Download sequence Send to blast |
MSGFNDLVPN GDWLPTSPSP SPSSRALISS LRADDFGWPA HLEEANESTC KNLVVEPQEH 60 VNWSNSVGND GAQTGAMTNQ TVNVSAPSKQ NTSSRGGLME RMAARTGFNV SRLNTDGLRP 120 SFVSQNQEIK SPYLSIAAGL SPSILLYSPV TLYNSLTILP QVSPPTGLLP CASGNEGRSV 180 MLMTEAADKM NETAFGTNSS SYLSFNPIME TGGVNEFQIE GSVDPNNSLQ LHSMEATQNE 240 QICNETTDIP MFTEEDVRGS DKNPEVRAFN AVGGITEHPP SLEKQQNEGA AGDTSVEDGH 300 NWIKYGENQV KGSEYPRSFY KCTHPNCLVK KEIARYHQGH VTEVIYNGAH KHPKPQPNQI 360 SGPGSSSSFG DLQLDNVDPT GTGVNSDLAL ETVQQGPTAG GLKRKNDNLE AISFAALHSE 420 YCRGAATLHS NDAQLGSADT VDIASIFSTE GDDHGTCGSA PLDCDDGGYD PESKIRKIEA 480 DATDTSSVSR SMKQPRIVVE TISEVDVIED GYRWRKYGQK LVKGNPNPRS YYKCTNSGCS 540 VRKHVERSPL DQMSVITSYD GKHNHDAPEE RSSIQVSSIA SIYRSNPIIT NAQDQVGRPE 600 PKQLQKNSRR YGRGPPFGST SGFNSSETNQ QQGLTGPSMT GFNSEQHQFS VPAYPYPGWP 660 QPVNDAGFVL PEGKPMPNPN MNYSNASSTY QQTMNGLPPG PQM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-31 | 499 | 568 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 5e-31 | 499 | 568 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00071 | PBM | Transfer from AT5G56270 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975522 | 0.0 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006352570.1 | 0.0 | PREDICTED: probable WRKY transcription factor 2 | ||||
TrEMBL | A0A3Q7IAT7 | 0.0 | A0A3Q7IAT7_SOLLC; Uncharacterized protein | ||||
STRING | Solyc10g005680.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3711 | 23 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56270.1 | 4e-97 | WRKY DNA-binding protein 2 |