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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim10g005330.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 713aa MW: 78690 Da PI: 5.3603 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.3 | 3.4e-20 | 59 | 114 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe++F+++++p+ ++r++L k+lgL+ qVk+WFqN+R+++k Sopim10g005330.0.1 59 KKQYHRHTQHQIQELESFFKECPHPDDKQRKDLGKRLGLEPLQVKFWFQNKRTQMK 114 688999***********************************************998 PP | |||||||
2 | START | 203.7 | 7.7e-64 | 237 | 458 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS START 1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla.... 77 ela +a++el+++a+ +ep+W+ ++n++e+ ++f+++ + ++ea+r+s+vv+ + lve+l+d++ qW++ ++ Sopim10g005330.0.1 237 ELAVAAMEELIRLAQTDEPLWMNQNsdnndLILNEEEYARTFPRGIGpkslgLKSEASRESAVVIIDYLHLVEILMDVS-QWTNFFTgivs 326 57899******************9999988899***********999********************************.*********** PP EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCE CS START 78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksngh 161 k ++lev+s+g galq+m+ae+q++splvp R+ +fvRy++q+g+g+w++vdvS+++ ++ + v R++++pSg++i++++ng+ Sopim10g005330.0.1 327 KSTILEVLSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHGDGTWAVVDVSLENLRSTS----VSRCRRRPSGCVIQELPNGY 413 ***************************************************************9965....8******************* PP EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 162 skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 skvtw+ehv++++r + +++r+lv sgla+gak+wvatl+rqce+ Sopim10g005330.0.1 414 SKVTWIEHVEVDDRAVNNIYRPLVDSGLAFGAKRWVATLERQCER 458 *******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.5E-21 | 42 | 114 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.19E-19 | 44 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.649 | 56 | 116 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.6E-18 | 58 | 120 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 7.8E-18 | 59 | 114 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.76E-18 | 59 | 117 | No hit | No description |
SuperFamily | SSF55961 | 3.85E-38 | 228 | 460 | No hit | No description |
PROSITE profile | PS50848 | 47.882 | 228 | 461 | IPR002913 | START domain |
CDD | cd08875 | 4.37E-123 | 232 | 457 | No hit | No description |
SMART | SM00234 | 6.1E-62 | 237 | 458 | IPR002913 | START domain |
Pfam | PF01852 | 5.1E-54 | 238 | 458 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 2.3E-7 | 295 | 458 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 2.56E-24 | 476 | 704 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0009913 | Biological Process | epidermal cell differentiation | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0090627 | Biological Process | plant epidermal cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 713 aa Download sequence Send to blast |
MFQHNMFDSH NFLLDMTRKT PENELDLIRD DEFETKSGAD IMEGGASGDD QDPNKRPKKK 60 QYHRHTQHQI QELESFFKEC PHPDDKQRKD LGKRLGLEPL QVKFWFQNKR TQMKSQHERH 120 ENTQLRNEND KLRAENIRYK EALTTATCPN CGGPAAIGEM SFDEQHLRIE NARLREEIDR 180 ISGIAAKYVG KPMLNYPQLP SLGGNILGEM FTTTTSAGDL LRSISGPTDA DKPIVIELAV 240 AAMEELIRLA QTDEPLWMNQ NSDNNDLILN EEEYARTFPR GIGPKSLGLK SEASRESAVV 300 IIDYLHLVEI LMDVSQWTNF FTGIVSKSTI LEVLSTGVAG NYNGALQVMT AEFQVPSPLV 360 PTRENYFVRY CKQHGDGTWA VVDVSLENLR STSVSRCRRR PSGCVIQELP NGYSKVTWIE 420 HVEVDDRAVN NIYRPLVDSG LAFGAKRWVA TLERQCERLA SVMASNIPTG DVITSPEGRK 480 SMLKLAERMV MSFCAGVGAS TAHTWTTLSG SGADDVRVMT RKSIDDPGRP PGIVLSAATS 540 FWMPVPTKRV FDFLRDENSR NEWDILSNGG LVQEMAHIAN GRDSGNSVSL LRVNSGNSSQ 600 NNMLILQESC LDITGSYVIY APVDIAAMNV VLSGGDPDYV ALLPSGFAIL PDGSSNAENS 660 NIAGGSLLTV AFQILVDSVP TAKLSLGSVA TVNSLIKCTV ERIKASITCE NA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975522 | 0.0 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010327237.1 | 0.0 | homeobox-leucine zipper protein MERISTEM L1 | ||||
Swissprot | Q8RWU4 | 0.0 | ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1 | ||||
TrEMBL | A0A3Q7IAN1 | 0.0 | A0A3Q7IAN1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc10g005330.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA932 | 24 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21750.2 | 0.0 | HD-ZIP family protein |