PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim09g098110.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 358aa    MW: 37935.8 Da    PI: 8.2481
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim09g098110.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.47.8e-11290335655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++Er RR ri  ++ +L++l+P+     +k  s a++L +Av++I+ Lq
  Sopim09g098110.0.1 290 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDLAVQHIRTLQ 335
                         689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.954284334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.59E-15287350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.33E-11288339No hitNo description
Gene3DG3DSA:4.10.280.105.5E-14289349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-8290335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-12290340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MYPSSTSSSS QGSMSHTSTT AGGAGGGLTR YGSAPGSFLT TAVEAVVNGN HEFASHGSHH  60
SHLGPSRFFQ SNLASTSLNS ESTSKAKEQS NLQRSIGFND LTIGGGSGAG GGVLPTTSTT  120
PLVRHSSSPA RFLNQLATAA GDTVSMGRGS YNPKGGGDSG RGITRLNSQL SFTTQEALSQ  180
IAEENEDIEG TSIANGHRKS THSYASASSF AMGSWEDNNS IMFSVTPSKR SKQISNDIVN  240
GLDDGETQFQ FGLSQTALEI ASMDRLLHIP EDSVPCKIRA KRGCATHPRS IAERERRTRI  300
SGKLKKLQDL VPNMDKQTSY ADMLDLAVQH IRTLQDQVQN LNTELENCKC GCRKSSQ*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6476030.0EF647603.1 Solanum lycopersicum chromosome 9 clone C09HBa0109D11, complete sequence.
GenBankEU1390720.0EU139072.1 Solanum lycopersicum chromosome 9 clone C09HBa0226D21, complete sequence.
GenBankHG9755210.0HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010326935.10.0transcription factor bHLH128 isoform X2
SwissprotQ8H1024e-81BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A3Q7IA680.0A0A3Q7IA68_SOLLC; Uncharacterized protein
STRINGSolyc09g098110.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64552328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.11e-76bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]