PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim09g097870.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 432aa MW: 48332.6 Da PI: 6.5266 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.7 | 1.2e-09 | 244 | 291 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ah+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Sopim09g097870.0.1 244 AHSLAERVRREKISERMKLLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 291 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.26E-10 | 238 | 295 | No hit | No description |
SuperFamily | SSF47459 | 2.22E-17 | 238 | 310 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.2E-17 | 240 | 308 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.682 | 240 | 290 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.0E-6 | 244 | 291 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.2E-11 | 246 | 296 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 432 aa Download sequence Send to blast |
MEKGNLFIND DNTTYEHLQN CFFNPNLDNN NSDPFESALS SMVSSPISIP NNNSGSDNFV 60 LRELIGRLGS ICNNTNNNSS STNNSCYSTP LNSPPKLNLS MRGNLPPTQF TTDPGFAERA 120 ARFSCFATNL ESNHSIKIQD VNLVQRNSEF GDSRENSSLS EQMIGQNDTN SRKRKSISKG 180 KSSKIVNDKN ESNAKRSKSE ENENKVTKKE ENAVLEENKD NQKATEPPKD YIHVRARRGQ 240 ATDAHSLAER VRREKISERM KLLQDLVPGC NKVTGKAVML DEIINYVQSL QRQVEFLSMK 300 LATVNPRMDF NMEALLSKDM FQSRGSLGHN MYQSETSTQA FPYGFQSQPN QNYHKGTEFP 360 FQINSLNPNL IRNSSMQLPP LDGFVEPTPQ VPTFFEDDLN SVVQMGFGQN QNQSFPGVAG 420 NVPNSQMKVE L* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 170 | 175 | SRKRKS |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975521 | 0.0 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004248023.1 | 0.0 | transcription factor bHLH62 | ||||
Swissprot | Q9SRT2 | 3e-99 | BH062_ARATH; Transcription factor bHLH62 | ||||
TrEMBL | M1BDN1 | 0.0 | M1BDN1_SOLTU; Uncharacterized protein | ||||
STRING | Solyc09g097870.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1057 | 23 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07340.1 | 5e-87 | bHLH family protein |
Publications ? help Back to Top | |||
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