 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sopim09g089600.0.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
| Family |
C2H2 |
| Protein Properties |
Length: 192aa MW: 22185.7 Da PI: 5.8628 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sopim09g089600.0.1 | genome | CSHL | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 14.4 | 0.00011 | 34 | 56 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
y+C+ C++ F++ L H++ H
Sopim09g089600.0.1 34 YECNFCKRGFTNAQALGGHMNIH 56
99*******************99 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 192 aa
Download sequence Send
to blast |
MASEKINNYS DSSSEDTSID RESEKFNDGI GRSYECNFCK RGFTNAQALG GHMNIHRKDK 60
LKAKQNNQES STKLSKEANY VFDNSRYNNN NNYAPISSHD ELQHHDHYSR AQMNSYQFHF 120
QLPQNPNHNQ HIYNQHHDGS RTRHENYYDG NNLSLRIGPT LIDDDDEEGE GKKDVDESEL 180
DLELRLGYSN H*
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975521 | 0.0 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |
