PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim09g089550.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

ZF-HD

Protein Properties

Length: 806aa MW: 90496.5 Da PI: 7.3636

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim09g089550.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	102.1	3.7e-32	554	608	3	58
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 ++rY+eClkNhAas+Ggha+DGCgEfmps geegt+ alkCaAC+CH nFHR+e + Sopim09g089550.0.1 554 SIRYRECLKNHAASMGGHALDGCGEFMPS-GEEGTPGALKCAACNCHQNFHRKEID 608 789***********************9.999******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14111	1.3E-8	42	124	IPR025558	Domain of unknown function DUF4283
Pfam	PF14111	1.4E-10	308	392	IPR025558	Domain of unknown function DUF4283
Pfam	PF04770	7.0E-30	555	607	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	2.0E-22	556	608	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	8.0E-30	556	607	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.735	557	606	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 806 aa Download sequence Send to blast
MAAPQRDFNI ENQEEPKSKI VYLNYRRVPA VIFRKKYWDW NSMVAVCKLT MVGKFFIPKP 60 KMTKIRASFH AKLSLKGVVK IRSYDSYHVF IDFTAEEDYQ SVLLKERVVV AGAIMEVFQW 120 TPEFHDQFRE AFGVVELENT KKDEHIGGGN EYGTEESDSV ACVPEVTHSD SEDRVASPIK 180 CETSKLPSSV GISCSEFSGL SSAPYRITGR IPSVTYESSS MCSTELVPFR GTYLNHNNLK 240 SYSREWNYGS KPTSEAADLA CETLSQPLYA LSIVERHENQ KSRPPIEVQH STYMGYPTLT 300 FPRRYGESLV SDYKLTLLGN FSYKRPKMKE IRADFKAQNP LSGQVKIRNC SSRQVLILFS 360 NEEDYYTVLY KKAIIVAGAL MQISWSSPDF HHEVKQNIHP DFRLSDAKSV NWNTDTSKLH 420 PSINGLLAPA TDEKSMSLQV PAVSQCLSVP SICPPLPLLA HSVSVAGRLC ADRLTTSGIY 480 VPQSYPKGIV GIPIFGSNEQ AGSGNTFPRP SQALNQQSLA QQHNQLNSYK PNMTVRIAQL 540 QPPSTTSVSD ITSSIRYREC LKNHAASMGG HALDGCGEFM PSGEEGTPGA LKCAACNCHQ 600 NFHRKEIDDY QPMDDVGSHS RFSQPRNNSS SGSIQNQVLI SLPTQQYHHD YSDSCSPRSL 660 VDSLQPYTQP PSPTSGSVYS QQALERIQPS SIRSSYSYEM VNHNTMQNGK QREYFWSDSS 720 RNTSRDHPSV RNENWNFDMD KPLNNRTPDH IPLEFPTYPS RCQPQTVFTD EFPHLDIINN 780 LLHEEHETGR TLMSNSGSQR LNKGS*

Sequence ? help Back to Top

Protein Sequence Length: 806 aa Download sequence Send to blast

MAAPQRDFNI ENQEEPKSKI VYLNYRRVPA VIFRKKYWDW NSMVAVCKLT MVGKFFIPKP  60
KMTKIRASFH AKLSLKGVVK IRSYDSYHVF IDFTAEEDYQ SVLLKERVVV AGAIMEVFQW  120
TPEFHDQFRE AFGVVELENT KKDEHIGGGN EYGTEESDSV ACVPEVTHSD SEDRVASPIK  180
CETSKLPSSV GISCSEFSGL SSAPYRITGR IPSVTYESSS MCSTELVPFR GTYLNHNNLK  240
SYSREWNYGS KPTSEAADLA CETLSQPLYA LSIVERHENQ KSRPPIEVQH STYMGYPTLT  300
FPRRYGESLV SDYKLTLLGN FSYKRPKMKE IRADFKAQNP LSGQVKIRNC SSRQVLILFS  360
NEEDYYTVLY KKAIIVAGAL MQISWSSPDF HHEVKQNIHP DFRLSDAKSV NWNTDTSKLH  420
PSINGLLAPA TDEKSMSLQV PAVSQCLSVP SICPPLPLLA HSVSVAGRLC ADRLTTSGIY  480
VPQSYPKGIV GIPIFGSNEQ AGSGNTFPRP SQALNQQSLA QQHNQLNSYK PNMTVRIAQL  540
QPPSTTSVSD ITSSIRYREC LKNHAASMGG HALDGCGEFM PSGEEGTPGA LKCAACNCHQ  600
NFHRKEIDDY QPMDDVGSHS RFSQPRNNSS SGSIQNQVLI SLPTQQYHHD YSDSCSPRSL  660
VDSLQPYTQP PSPTSGSVYS QQALERIQPS SIRSSYSYEM VNHNTMQNGK QREYFWSDSS  720
RNTSRDHPSV RNENWNFDMD KPLNNRTPDH IPLEFPTYPS RCQPQTVFTD EFPHLDIINN  780
LLHEEHETGR TLMSNSGSQR LNKGS*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975521	0.0	HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004247917.1	0.0	uncharacterized protein LOC101258410 isoform X2
TrEMBL	A0A3Q7I763	0.0	A0A3Q7I763_SOLLC; Uncharacterized protein
STRING	Solyc09g089550.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14101	8	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75240.1	5e-25	homeobox protein 33