 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sopim09g074810.0.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
| Family |
bHLH |
| Protein Properties |
Length: 156aa MW: 17496.2 Da PI: 8.7541 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sopim09g074810.0.1 | genome | CSHL | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 16.6 | 1.4e-05 | 7 | 38 | 22 | 55 |
HHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 22 eLrellPkaskapskKlsKaeiLekAveYIksLq 55
Lr+l+P + ++K s ++ Av+YIk+Lq
Sopim09g074810.0.1 7 SLRSLIPIEF--IKGKRSASDHMHAAVNYIKYLQ 38
7*******65..*********************9 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 156 aa
Download sequence Send
to blast |
MANLVTSLRS LIPIEFIKGK RSASDHMHAA VNYIKYLQKN IQELDNTRKC IISLDNQNKS 60
STIVDIFQQN NNCVTVNKCE DGMEILINVN NSNKEDIFSL SKVLRWLLKQ GLNVVSCDNS 120
KKDERTLIRI QCQVSDISSG LTVVGLQKKL TDVIN*
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | EF647601 | 0.0 | EF647601.1 Solanum lycopersicum chromosome 9 clone C09HBa0099P03, complete sequence. |
| GenBank | HG975521 | 0.0 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |
