PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopim09g074690.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | HB-other | ||||||||
Protein Properties | Length: 309aa MW: 34625.9 Da PI: 7.461 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 19.6 | 1.5e-06 | 65 | 121 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ +++ F + ++++e +e+++ g+t +qV+ +F +R++ +k Sopim09g074690.0.1 65 KRPRDLLNPKAIKYMQSIFSIKDAINKKETREISALFGVTVTQVRDFFAAQRTRVRK 121 799***************************************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 9.167 | 62 | 122 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.98E-7 | 64 | 124 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 0.0046 | 64 | 126 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.34E-4 | 65 | 121 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-5 | 65 | 123 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 309 aa Download sequence Send to blast |
MENQLQLALT SPTTPFSSLF ESQKEILNSQ IYQLQNIVVQ QCNLTGVNPL SQEMAAGALS 60 IKIGKRPRDL LNPKAIKYMQ SIFSIKDAIN KKETREISAL FGVTVTQVRD FFAAQRTRVR 120 KFLRLSREKP ITTNLSIEGP IPLSSDPSSQ TEPVPLDSAV PISTEEGPSC STQDEVLTAM 180 DERDRHFVDN ILTLMCKEET FSGRVKLMDW ILEVQNPSVL YWFLTKGGVM ILSAWLSEAA 240 GEEQTSVLHL ILKVLCHLPL HKAFPGHMSA ILQSVNSLRF YRTPDQISQT GQEFCLQDGA 300 RYLQRARL* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269|PubMed:10363371}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975521 | 0.0 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004247447.1 | 0.0 | homeobox protein LUMINIDEPENDENS | ||||
Swissprot | Q38796 | 1e-111 | LUMI_ARATH; Homeobox protein LUMINIDEPENDENS | ||||
TrEMBL | A0A3Q7I761 | 0.0 | A0A3Q7I761_SOLLC; Uncharacterized protein | ||||
STRING | Solyc09g074690.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5240 | 21 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G02560.2 | 1e-113 | HB-other family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|