PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim09g066250.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 135aa    MW: 15302.2 Da    PI: 6.7758
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim09g066250.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000132547123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C  C++ F++   L  H++ H
  Sopim09g066250.0.1 25 YECVFCKRGFNTAQALGGHMNIH 47
                        99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.4E-42351IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.87E-62352No hitNo description
PfamPF139121.3E-52549IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.6162552IPR007087Zinc finger, C2H2
PROSITE patternPS0002802747IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MKNSSTHQEV DLQQKHQENG IGRFYECVFC KRGFNTAQAL GGHMNIHRKD RIRINRSSRI  60
NGPYLTCFPG HTPTTTIGPF VMNGPDCGSE DNRPQCLNLL GDDWRIFQFG ENMEKNKGIL  120
EDDLDLELRL GHDP*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755210.0HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015166047.13e-85PREDICTED: zinc finger protein 8-like
TrEMBLA0A3Q7I4Q03e-96A0A3Q7I4Q0_SOLLC; Uncharacterized protein
STRINGSolyc09g066250.1.16e-97(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21362152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.19e-12C2H2 family protein