PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim09g065820.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 303aa    MW: 32050.1 Da    PI: 5.9703
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim09g065820.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.41.4e-09150194554
                         HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                         h+++Er RR+ri +++  L+el+P+ +      K + a +L + v+Y+k L
  Sopim09g065820.0.1 150 HSIAERLRRERIAERIRALQELVPSvN------KTDRAVMLDEIVDYVKFL 194
                         99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.06E-15143204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.044145194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-14147204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.4E-7150194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-10151200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MANNPSEGPS DDFFDQILGF PAYNGAEPNL AGNDAGAIPP AMMLQLNSGD GSSQFTGVGL  60
GVGLGGGGFH GHGGGGSFPL GLSLEQGKGG FLKMDDVSAP GRRFRDDVVD SRASSSVKPG  120
FHGQPMPSMP HPPAIRPRVR ARRGQATDPH SIAERLRRER IAERIRALQE LVPSVNKTDR  180
AVMLDEIVDY VKFLRLQVKV LSMSRLGGAG AVAPLVTDIP ISSVEEESSE GGNNNQPAWE  240
KWSSDGTERQ VAKLMEENVG AAMQFLQSKA LCIMPISLAS AIYHSQPPDT SSLVKPETNP  300
PS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154159RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2142100.0AC214210.1 Solanum lycopersicum chromosome 9 clone C09HBa0135N15, complete sequence.
GenBankHG9755210.0HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004247209.10.0transcription factor UNE12
SwissprotO227681e-124UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A3Q7I4G40.0A0A3Q7I4G4_SOLLC; Uncharacterized protein
STRINGSolyc09g065820.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57992434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.22e-85bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]