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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sopim09g065670.0.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
C2H2 |
Protein Properties |
Length: 471aa MW: 51502.5 Da PI: 8.9169 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopim09g065670.0.1 | genome | CSHL | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 17.3 | 1.3e-05 | 44 | 66 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C++C+k F r nL+ H r H
Sopim09g065670.0.1 44 FVCEICNKGFQRDQNLQLHRRGH 66
89*******************88 PP
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2 | zf-C2H2 | 11.6 | 0.00083 | 120 | 142 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+kC +C+k + +s+ k H +t+
Sopim09g065670.0.1 120 WKCDKCSKIYAVQSDWKAHSKTC 142
58*****************9998 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 471 aa
Download sequence Send
to blast |
MVSNHNHHEQ PPKIKKKRNL PGNPDPDAEV VALSPKTLLA TNRFVCEICN KGFQRDQNLQ 60 LHRRGHNLPW KLKQRTNKEN KKKAYVCPEP TCVHHHPSRA LGDLTGIKKH FCRKHGEKKW 120 KCDKCSKIYA VQSDWKAHSK TCGTKEYRCD CGTLFARKDS FVTHRAFCDA LAEESARLSA 180 NSGLMHRAAA TSTIANSAAI ADEPNFHLDQ SSVFPFPANQ RHFANPPPPQ LPISAAATGV 240 TTHISLNPWE PQIPLNPNHT HEENHHQITH PVPIKTESIH FPISSSLPFY HDQHYPVFHR 300 GSFSIPSPQL AATALLQRAT TMGTNSTVNH VNSTMAHLNR GTLTHVTPNG FLSFGSENIP 360 GNWQKRDNLT RDFLGLTGDH HHHHDHDDSS SSAGGVGGGG GGGQVLPTNG NVGNGLLLSY 420 GGNRMQDFQQ TLYERDNSVL KHHPLGFGFA GAGAGAGAAA DSTTGTWGDC *
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG975521 | 0.0 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |