PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Sopim09g057880.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

FAR1

Protein Properties

Length: 262aa MW: 29680.6 Da PI: 7.2372

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim09g057880.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	82.3	8.1e-26	95	185	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+ YA++vGF +r+++ ++s+ +++ +r++ C+k+g+ + k+++ r+ r++tr gCka+l vk +k++kw+vt++++eH+H+l+p Sopim09g057880.0.1 95 EFYDYYARRVGFIMRIDQCRRSEVDKRSLSRRLSCNKQGHYVKMKNHHGPPRKARTSTREGCKAMLLVKVNKSDKWVVTRFVKEHTHQLVP 185 6********************************************9***************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.0E-23	95	185	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MFEEEEPDLG EETSEIRIKA STALNPQNLV PSGTSKAASA VHTSDTHHFG VAVDLKAGVT 60 TIDCSAESQS VVCQDNVVPE PFIGMEFESE YAAKEFYDYY ARRVGFIMRI DQCRRSEVDK 120 RSLSRRLSCN KQGHYVKMKN HHGPPRKART STREGCKAML LVKVNKSDKW VVTRFVKEHT 180 HQLVPSGCSS GNAMDKKDRR IQELSMELEH QDKLCDLYRE QLVTFLENVE QQMELMSKKI 240 QVAVNNVKEV EAEVQKQPNS K*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975521	0.0	HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010326278.1	0.0	protein FAR1-RELATED SEQUENCE 2 isoform X1
Refseq	XP_025888596.1	0.0	protein FAR1-RELATED SEQUENCE 2 isoform X1
Refseq	XP_025888597.1	0.0	protein FAR1-RELATED SEQUENCE 2 isoform X1
TrEMBL	A0A3Q7I1N9	0.0	A0A3Q7I1N9_SOLLC; Uncharacterized protein
STRING	Solyc09g057880.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11602	20	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	2e-57	FAR1 family protein